View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_17 (Length: 449)
Name: NF0947_low_17
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Complemental strand, 38818209 - 38817795
Alignment:
| Q |
30 |
caacaaagtaataatgaaaagggcaccttgtttcaacttaannnnnnnnnnnnnnnnncaggacgaactaataaatctgtatgctttttggagaaatttg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38818209 |
caacaaagtaataatgaaaagggcaccttgtttcaacttaattttttattttatttttcaggacgaactaataaatctgtatgctttttggagaaatttg |
38818110 |
T |
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| Q |
130 |
aatagattccaattcatctgaacatatgctttctaaaattggtatactagatgagcactaatggtaacaaccactcaagaaattactacaaaagattcaa |
229 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38818109 |
aatagattccaattcatctgaacgtatgctttctaaaattggtatactagatgagcactaatggtaacaaccactcaagaaattactacaaaagattcaa |
38818010 |
T |
|
| Q |
230 |
acaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataatattcccctgataaaggctaagcctagagccactttaaataaataatata |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38818009 |
acaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataatattcccctgataaaggctaagcctagagccactttaaataaataatata |
38817910 |
T |
|
| Q |
330 |
agacatagaaaatgcaaggaaatgattaatttgaatctggctatcattcctctaaaacgaaatgaatcttggctaaagccacggatcacgctcctcatgt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38817909 |
agacatagaaaatgcaaggaaatgattaatttgaatctggctatcattcctctaaaacgaaatgaatcttggctaaagccacggatcacgctcctcatgt |
38817810 |
T |
|
| Q |
430 |
ctcattcatctcact |
444 |
Q |
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| T |
38817809 |
ctcattcttctcact |
38817795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 39458845 - 39458787
Alignment:
| Q |
246 |
caacaaggaaatttcaaggtctagttcttcataatattcccctgataaaggctaagcct |
304 |
Q |
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||||||| | |||||||||||||| ||||| |||| ||||||||||||||||| |||| |
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| T |
39458845 |
caacaagcatatttcaaggtctagctcttcgcaataatcccctgataaaggctaggcct |
39458787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 39458956 - 39458903
Alignment:
| Q |
94 |
gaactaataaatctgtatgctttttggagaaatttgaatagattccaattcatct |
148 |
Q |
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||||||| |||| ||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
39458956 |
gaactaaaaaatttgtatgctttt-gcagaaatttgagtagattccaattcatct |
39458903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 96 - 279
Target Start/End: Complemental strand, 12083508 - 12083323
Alignment:
| Q |
96 |
actaataaatctgtatgctttttggagaaatttgaatagattccaattcatctgaacatatgctttctaaaattggtatactagatgagcactaatggta |
195 |
Q |
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||||||||| || ||||||||| | | | |||||||||||||||||||||||| ||||| ||||||||| || ||||||||| || ||| ||||||| | |
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| T |
12083508 |
actaataaaactatatgctttt-gcaaatatttgaatagattccaattcatctaaacatctgctttctacaaatggtatacttgaagagggctaatggaa |
12083410 |
T |
|
| Q |
196 |
acaacca--ctcaagaaattactacaaaagattcaaacaatgttcct-ttctccaacaaggaaatttcaaggtctagttcttcataa |
279 |
Q |
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| T |
12083409 |
agaaccactctcaagaaattacaacaaaagattcaaataatgttcctaatctacaacaagtatatttcaaggtctagttcttcataa |
12083323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 39402676 - 39402749
Alignment:
| Q |
203 |
ctcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataa |
279 |
Q |
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||||||||||||| || ||| ||||||||| | ||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
39402676 |
ctcaagaaattacaacgaaatattcaaacagttttcctttct---acaaggacatttcaaggtgaagttcttcataa |
39402749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 20150870 - 20150795
Alignment:
| Q |
203 |
ctcaagaaattactacaaaagattcaaacaatgttcctttctccaacaaggaaatttcaaggtctagttcttcataata |
281 |
Q |
| |
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||||| || |||| |||||||||| ||||||||||| || ||||||||| ||||||||||||||||| || ||||| |
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| T |
20150870 |
ctcaaaaatttacaacaaaagattgaaacaatgttc---tcgacaacaaggatatttcaaggtctagttcgtcgtaata |
20150795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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