View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_low_20 (Length: 420)
Name: NF0947_low_20
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 54488086 - 54487813
Alignment:
| Q |
18 |
ctgtggaaaaagaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtgg |
117 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54488086 |
ctgtgggaaaagaaaaagggtaattagggaaatgaaattgccatgacaatgacaaaattaattctcaaaatcacgttaccgcaaaagctccgaattgtgg |
54487987 |
T |
|
| Q |
118 |
cttctcacaaacgtgagtttgggaccatattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaa |
217 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
54487986 |
cttctcacaaacgtgagtttgagactatattcacgttttataaaatcgcttctgaagctgcccaaacatcaaaaagtatgttgaaaccacgtttcaaaaa |
54487887 |
T |
|
| Q |
218 |
gcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcacgaaatcgattttacaaactcaatgttacc |
291 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54487886 |
gcaaactcgcgtttgaggcttccaaacgtggaaccaaacaagcacgaaatcgattttacaaactcaatgttacc |
54487813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 38305495 - 38305251
Alignment:
| Q |
18 |
ctgtggaaaaagaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtgg |
117 |
Q |
| |
|
|||||| |||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38305495 |
ctgtgggaaaataaaaagggtaattaggaaaatgaaattgtcatgacaatgacaaaattaattatcaaaatcaagttgccgcaaaagctccgaattgtgg |
38305396 |
T |
|
| Q |
118 |
cttctcacaaacgtgagtttgggaccatattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
38305395 |
cttctcacaaacgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatgaaaaagtatgctgaaaccacgtttcaaaaa |
38305296 |
T |
|
| Q |
218 |
gcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
262 |
Q |
| |
|
||||||||| |||||||||||| ||| | |||||||||||||||| |
|
|
| T |
38305295 |
gcaaactcgtgtttgaggcttccaaacgcggaaccaaacaagcac |
38305251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 24 - 262
Target Start/End: Original strand, 31246892 - 31247130
Alignment:
| Q |
24 |
aaaaagaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttctc |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31246892 |
aaaaagaaaaagggtaattagggaaatgaaactgtcatgacaatgacaaaattgattctcaaaatcacgttgccgcaaaagcttcgaattgtggcttctc |
31246991 |
T |
|
| Q |
124 |
acaaacgtgagtttgggaccatattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaaac |
223 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31246992 |
acaaacgtgaatttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatcaaaaagtatgctaaaatcacgtttcaaaaagcaaac |
31247091 |
T |
|
| Q |
224 |
tcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
262 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
31247092 |
tcgcgtttgaggcttccaaacgcggaaccaaacaagcac |
31247130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 42600029 - 42599789
Alignment:
| Q |
22 |
ggaaaaagaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttc |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42600029 |
ggaaaaagaaaaagggtaattagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttaccgcaaaagctccgaattgtggcttc |
42599930 |
T |
|
| Q |
122 |
tcacaaacgtgagtttgggaccatattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaa |
221 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||| || | | ||| ||||||||||||||||| |
|
|
| T |
42599929 |
tcacaaacgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgaccaaacatcaaaaaataagttgaaaccacgtttcaaaaagcaa |
42599830 |
T |
|
| Q |
222 |
actcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
262 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
42599829 |
actcgcgtttgaggcttccaaacgcggaaccaaacaagcac |
42599789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 42752793 - 42753033
Alignment:
| Q |
22 |
ggaaaaagaaaaagggtaactagggaaatgaaactgtcatgacaatgacaaaattaattctcaaaatcacgttgccgcaaaagctccgaattgtggcttc |
121 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42752793 |
ggaaaaggaaaaagggtaattggggaaatgaaactgccatgacaatgacaaaattaattctcaaaatcacgttgtcgcaaaagctccgaattgtggcttc |
42752892 |
T |
|
| Q |
122 |
tcacaaacgtgagtttgggaccatattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtatgctcaaatcacgtttcaaaaagcaa |
221 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
42752893 |
tcacaaacgtgagtttgggactatattcacgttttatagaatcgcttctgaagctgcccaaacatcaaaaagtatgttgaaaccacgtttcaaaaagcaa |
42752992 |
T |
|
| Q |
222 |
actcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
262 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
42752993 |
actcgcgtttgaggcttccaaacgcggaaccaaacaagcac |
42753033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 262
Target Start/End: Complemental strand, 41461 - 41293
Alignment:
| Q |
93 |
ttgccgcaaaagctccgaattgtggcttctcacaaacgtgagtttgggaccatattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaa |
192 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| |||||| ||| ||||||||| | ||||||||| ||||| |
|
|
| T |
41461 |
ttgccgcaaaagctccgaattgtggcttcacagaaacgcgagttcgggactatattcacattttatggaatcacttctgaagttatccaaacat-aaaaa |
41363 |
T |
|
| Q |
193 |
gtatgctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
262 |
Q |
| |
|
|||| | ||| ||| ||||||||||| |||||||||| |||||| | ||| | |||||||||| ||||| |
|
|
| T |
41362 |
gtattgtgaaaccacctttcaaaaagctaactcgcgttggaggctacgaaacgcggaaccaaacgagcac |
41293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 4569671 - 4569836
Alignment:
| Q |
97 |
cgcaaaagctccgaattgtggcttctcacaaacgtgagtttgggaccatattcacgttttataaaattgcttctgaagctgtccaaacatcaaaaagtat |
196 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||| ||||||||| ||||||||||| || ||| ||| ||||| | ||||||| |||||||||| |
|
|
| T |
4569671 |
cgcaaaagctcataattgtcgcttctcataaacgtgggtttgggactgtattcacgtttgatggaatcacttatgaagttacccaaacagcaaaaagtat |
4569770 |
T |
|
| Q |
197 |
gctcaaatcacgtttcaaaaagcaaactcgcgtttgaggcttctaaatgtggaaccaaacaagcac |
262 |
Q |
| |
|
| | ||| ||||||| ||||||||||| ||||||||||||| | ||| |||| ||||||||||||| |
|
|
| T |
4569771 |
gatgaaaccacgtttgaaaaagcaaacgcgcgtttgaggctgccaaacgtggtaccaaacaagcac |
4569836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University