View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0947_low_23 (Length: 417)

Name: NF0947_low_23
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0947_low_23
NF0947_low_23
[»] chr3 (24 HSPs)
chr3 (154-417)||(24778792-24779055)
chr3 (1-126)||(24778639-24778764)
chr3 (1-44)||(40991640-40991683)
chr3 (1-44)||(46148237-46148280)
chr3 (1-43)||(15296117-15296159)
chr3 (1-46)||(31566191-31566236)
chr3 (10-46)||(41842562-41842598)
chr3 (1-44)||(29601101-29601144)
chr3 (1-44)||(34844603-34844646)
chr3 (1-44)||(36304175-36304218)
chr3 (1-44)||(42510046-42510089)
chr3 (1-44)||(48508444-48508487)
chr3 (1-44)||(49042146-49042189)
chr3 (1-43)||(21862771-21862813)
chr3 (1-43)||(24541362-24541404)
chr3 (1-46)||(5169039-5169084)
chr3 (1-34)||(37102838-37102871)
chr3 (1-46)||(40273235-40273280)
chr3 (4-44)||(23534603-23534643)
chr3 (5-33)||(31146919-31146947)
chr3 (4-44)||(40116371-40116411)
chr3 (1-33)||(41529981-41530013)
chr3 (3-35)||(49503600-49503632)
chr3 (1-37)||(52882692-52882728)
[»] chr8 (15 HSPs)
chr8 (1-44)||(45419444-45419487)
chr8 (1-44)||(490544-490587)
chr8 (1-44)||(2216495-2216538)
chr8 (5-44)||(29700485-29700524)
chr8 (1-43)||(1928617-1928659)
chr8 (2-44)||(14459104-14459146)
chr8 (4-44)||(43904698-43904738)
chr8 (1-44)||(27556332-27556375)
chr8 (1-44)||(29520858-29520901)
chr8 (1-44)||(32931169-32931212)
chr8 (1-44)||(35646960-35647003)
chr8 (1-44)||(35914631-35914674)
chr8 (1-46)||(14742112-14742157)
chr8 (2-46)||(10824220-10824264)
chr8 (3-43)||(24558693-24558733)
[»] chr2 (20 HSPs)
chr2 (1-44)||(3720445-3720488)
chr2 (1-44)||(6219174-6219217)
chr2 (1-45)||(887095-887139)
chr2 (1-44)||(3481363-3481406)
chr2 (1-44)||(9496075-9496118)
chr2 (1-44)||(9531630-9531673)
chr2 (6-41)||(11412922-11412957)
chr2 (1-44)||(12734909-12734952)
chr2 (5-44)||(26670977-26671016)
chr2 (1-44)||(33504433-33504476)
chr2 (1-46)||(3635353-3635398)
chr2 (1-46)||(11992138-11992183)
chr2 (1-42)||(36366847-36366888)
chr2 (1-46)||(38430091-38430136)
chr2 (1-46)||(41197257-41197302)
chr2 (1-34)||(43573160-43573193)
chr2 (1-33)||(12520092-12520124)
chr2 (8-44)||(19336930-19336966)
chr2 (4-44)||(32364954-32364994)
chr2 (1-33)||(39709231-39709263)
[»] chr1 (32 HSPs)
chr1 (2-44)||(39123399-39123441)
chr1 (1-44)||(4590562-4590605)
chr1 (1-44)||(17269019-17269062)
chr1 (1-44)||(21769741-21769784)
chr1 (1-44)||(28090724-28090767)
chr1 (1-44)||(41560438-41560481)
chr1 (1-44)||(48865737-48865780)
chr1 (1-44)||(50257779-50257822)
chr1 (2-44)||(27704159-27704201)
chr1 (1-42)||(37462906-37462947)
chr1 (4-44)||(10200339-10200379)
chr1 (4-44)||(25715359-25715399)
chr1 (4-44)||(27072520-27072560)
chr1 (1-44)||(2429659-2429702)
chr1 (1-44)||(8796418-8796461)
chr1 (1-44)||(22175354-22175397)
chr1 (1-44)||(28511831-28511874)
chr1 (1-44)||(37294138-37294181)
chr1 (1-44)||(37429929-37429972)
chr1 (1-44)||(40568440-40568483)
chr1 (1-44)||(44941806-44941849)
chr1 (1-44)||(52532646-52532689)
chr1 (1-44)||(52981437-52981480)
chr1 (1-35)||(34444574-34444608)
chr1 (1-43)||(39140725-39140767)
chr1 (1-42)||(2544804-2544845)
chr1 (1-46)||(37311785-37311830)
chr1 (3-44)||(39318338-39318379)
chr1 (1-33)||(26299288-26299320)
chr1 (1-44)||(29128992-29129036)
chr1 (1-29)||(43481828-43481856)
chr1 (1-41)||(52561619-52561659)
[»] chr7 (17 HSPs)
chr7 (1-42)||(25891099-25891140)
chr7 (1-44)||(2885752-2885795)
chr7 (1-43)||(1011256-1011298)
chr7 (1-42)||(47852298-47852339)
chr7 (7-43)||(33281097-33281133)
chr7 (1-45)||(34029706-34029750)
chr7 (1-44)||(14057687-14057730)
chr7 (1-44)||(14367715-14367758)
chr7 (5-44)||(28627967-28628006)
chr7 (1-44)||(37618154-37618197)
chr7 (1-44)||(40979958-40980001)
chr7 (1-44)||(45054333-45054376)
chr7 (1-35)||(28708599-28708633)
chr7 (1-34)||(42187660-42187693)
chr7 (1-46)||(43281881-43281926)
chr7 (4-44)||(24376056-24376096)
chr7 (8-44)||(36239833-36239869)
[»] chr6 (12 HSPs)
chr6 (1-42)||(18130844-18130885)
chr6 (2-44)||(8364765-8364807)
chr6 (1-42)||(23888508-23888549)
chr6 (4-44)||(3210541-3210581)
chr6 (1-44)||(34535-34578)
chr6 (1-44)||(7337225-7337268)
chr6 (1-44)||(12890784-12890827)
chr6 (1-44)||(28085585-28085628)
chr6 (1-44)||(31818740-31818783)
chr6 (1-42)||(30642980-30643021)
chr6 (2-35)||(34939317-34939350)
chr6 (4-44)||(30031465-30031505)
[»] chr5 (14 HSPs)
chr5 (1-44)||(418064-418107)
chr5 (1-44)||(14667980-14668023)
chr5 (1-42)||(30639746-30639787)
chr5 (8-44)||(28276447-28276483)
chr5 (1-48)||(1275469-1275516)
chr5 (1-44)||(20456982-20457025)
chr5 (1-44)||(38132545-38132588)
chr5 (1-44)||(41894282-41894325)
chr5 (1-35)||(27386558-27386592)
chr5 (5-43)||(32442159-32442197)
chr5 (3-44)||(9235256-9235297)
chr5 (1-46)||(13561416-13561461)
chr5 (1-46)||(14911379-14911424)
chr5 (3-44)||(42576219-42576260)
[»] chr4 (19 HSPs)
chr4 (1-44)||(28236391-28236434)
chr4 (1-44)||(35690480-35690523)
chr4 (1-44)||(36255552-36255595)
chr4 (4-44)||(26024883-26024923)
chr4 (1-44)||(25575033-25575076)
chr4 (3-46)||(37042696-37042739)
chr4 (1-44)||(45209235-45209278)
chr4 (1-35)||(15661902-15661936)
chr4 (1-46)||(21528495-21528540)
chr4 (1-46)||(27450210-27450255)
chr4 (1-46)||(32479245-32479290)
chr4 (1-46)||(49939764-49939809)
chr4 (1-30)||(50862854-50862883)
chr4 (3-35)||(11400477-11400509)
chr4 (3-35)||(11410204-11410236)
chr4 (2-42)||(28467649-28467689)
chr4 (1-37)||(30634136-30634172)
chr4 (4-44)||(47265228-47265268)
chr4 (4-40)||(50967061-50967097)
[»] scaffold0024 (1 HSPs)
scaffold0024 (5-44)||(48150-48189)
[»] scaffold0050 (1 HSPs)
scaffold0050 (3-44)||(58258-58299)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 154 - 417
Target Start/End: Original strand, 24778792 - 24779055
Alignment:
Q  154 gaacatatgttccataatccacatgcaagattataatatctcaaaacagggcacatacaaatattaaagaattaaacattaatccctaaaattcaaatca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24778792 gaacatatgttccataatccacatgcaagattataatatctcaa--cagggcacatacaaatattaaagaattaaacattaatccctaaaattcaaatca 24778889  T
Q  254 tatatcagttaagcatgcaacaaaaacccattctttagcnnnnnnnntccctgctcagcatacaagcttctaaaatcttaaagaacagttacaagaacat 353  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24778890 tatatcagttaagcatgcaacaaaaacccattctttagcaaaaaaaatccctgctcagcatacaagcttctaaaatcttaaagaacagttacaagaacat 24778989  T
Q  354 ttttacaaatgagaaataagaaaaactactccaatatcaagaaaataa--atcagacgtgatattt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  24778990 ttttacaaatgagaaataagaaaaactactccaatatcaagaaaataaatatcagacgtgatattt 24779055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 24778639 - 24778764
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaacaatatgaactacaatggctaactaataagtcataagcgatacaacattaagca 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24778639 tggggtcggctacatggatcaaattacaccataatgttctatcaaacaatatgaactacaatggctaactaataagtcataagcgatacaacattaagca 24778738  T
Q  101 ccaagctctagaccagttaagcatgc 126  Q
    ||||||||||||||||||||||||||    
T  24778739 ccaagctctagaccagttaagcatgc 24778764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40991683 - 40991640
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  40991683 tggggtcagctacatggatcaaattacaccataatgttctatca 40991640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46148280 - 46148237
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  46148280 tggggtcggctacatggatcaaattacgccataatgttctatca 46148237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15296159 - 15296117
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatc 43  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  15296159 tggggtcggccacatggatcaaattacaccataatgttctatc 15296117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31566191 - 31566236
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||    
T  31566191 tggggtcggctacatggatcaaatgacaccatagtgttctatcaaa 31566236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 41842562 - 41842598
Alignment:
Q  10 ctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||||| ||||||||||    
T  41842562 ctacatggatcaaattacaccataatgttctatcaaa 41842598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29601144 - 29601101
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||    
T  29601144 tggggtcagctacatggatcaaattacatcataatgttctatca 29601101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34844603 - 34844646
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||| |||| |||||||| ||||||||    
T  34844603 tggggtcggctacatggatcatattataccataatgttctatca 34844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36304218 - 36304175
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||    
T  36304218 tggggtcggctacatggatcaaattacgccataatgtcctatca 36304175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42510046 - 42510089
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  42510046 tggggtcggctacatggatcaaattacgccataatgttcaatca 42510089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 48508487 - 48508444
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  48508487 tggggtcggctacatggatcaaattacgccatagtgttctatca 48508444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 49042189 - 49042146
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  49042189 tggggtcggctacatggatcaaattacgccatagtgttctatca 49042146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21862771 - 21862813
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatc 43  Q
    |||||||||||||||||||||||| |||||||| | |||||||    
T  21862771 tggggtcggctacatggatcaaatgacaccatattcttctatc 21862813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24541362 - 24541404
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatc 43  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||    
T  24541362 tggggtcgggtacatggatcaaattacgccataatgttctatc 24541404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5169084 - 5169039
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  5169084 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 5169039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37102838 - 37102871
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataa 34  Q
    |||||| |||||||||||||||||||||||||||    
T  37102838 tggggtaggctacatggatcaaattacaccataa 37102871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40273235 - 40273280
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  40273235 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 40273280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 23534603 - 23534643
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||| |||||||||||||||||| ||||||| ||||||||    
T  23534603 ggtcgactacatggatcaaattacgccataatgttctatca 23534643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 31146947 - 31146919
Alignment:
Q  5 gtcggctacatggatcaaattacaccata 33  Q
    |||||||||||||||||||||||||||||    
T  31146947 gtcggctacatggatcaaattacaccata 31146919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 40116371 - 40116411
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||| ||||||||||||| ||||||| ||||||||    
T  40116371 ggtcggctacgtggatcaaattacgccataatgttctatca 40116411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41530013 - 41529981
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccata 33  Q
    ||||||||||||||||||||||||||| |||||    
T  41530013 tggggtcggctacatggatcaaattacgccata 41529981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 49503600 - 49503632
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||||||||||||||||| |||||||    
T  49503600 gggtcggctacatggatcaaattacgccataat 49503632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52882692 - 52882728
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattt 37  Q
    |||||| |||||||||||||||||||| |||||||||    
T  52882692 tggggttggctacatggatcaaattacgccataattt 52882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45419487 - 45419444
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  45419487 tggggtcggctacatggatcaaattacaccataatgttctatca 45419444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 490587 - 490544
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  490587 tggggtcggctacatggatcaaattacgccataatgttctatca 490544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2216538 - 2216495
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||    
T  2216538 tggggtcggctacatggatcaaattacactataatgttctatca 2216495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 29700524 - 29700485
Alignment:
Q  5 gtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  29700524 gtcggctacatggatcaaattacaccataatgttctatca 29700485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1928617 - 1928659
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatc 43  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  1928617 tggggtcggctacatggatcaaattacgccataatgttctatc 1928659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 14459146 - 14459104
Alignment:
Q  2 ggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  14459146 ggggtcggctacatggatcaaattacaccataatgttccatca 14459104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 43904698 - 43904738
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  43904698 ggtcggctacatggatcaaattacgccataatgttctatca 43904738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27556332 - 27556375
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||    
T  27556332 tggggtcggctacatggatcaaattatgccataatgttctatca 27556375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29520901 - 29520858
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||    
T  29520901 tggggtgggctacatggatcaaattacgccataatgttctatca 29520858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32931212 - 32931169
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||    
T  32931212 tggggtcggctacatggatcaaattatgccataatgttctatca 32931169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35646960 - 35647003
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||    
T  35646960 tggggtcggctgcatggatcaaattacgccataatgttctatca 35647003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35914631 - 35914674
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||    
T  35914631 tggggtcagctacatggatcaaattacgccataatgttctatca 35914674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14742112 - 14742157
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  14742112 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 14742157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 10824220 - 10824264
Alignment:
Q  2 ggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    ||||||||||||||||||||| ||||  |||||| ||||||||||    
T  10824220 ggggtcggctacatggatcaacttacttcataatgttctatcaaa 10824264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 24558733 - 24558693
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataattttctatc 43  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  24558733 gggtcggctacatggatcaaattacgtcataatgttctatc 24558693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3720445 - 3720488
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  3720445 tggggtcggctacatggatcaaattacaccataatgttctatca 3720488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6219217 - 6219174
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  6219217 tggggttggctacatggatcaaattacaccataatgttctatca 6219174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 887095 - 887139
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaa 45  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||    
T  887095 tggggtcagctacatggatcaaattacgccataatgttctatcaa 887139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3481406 - 3481363
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||    
T  3481406 tggggtcagctacatggatcaaattacgccataatgttctatca 3481363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9496118 - 9496075
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||    
T  9496118 tggggttggctacatggatcaaattacgccataatgttctatca 9496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9531630 - 9531673
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  9531630 tggggtcggctacatggatcaaattacgccataatgttccatca 9531673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 11412957 - 11412922
Alignment:
Q  6 tcggctacatggatcaaattacaccataattttcta 41  Q
    |||||||||||||||||||||||||||||| |||||    
T  11412957 tcggctacatggatcaaattacaccataatgttcta 11412922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12734952 - 12734909
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||| |||||||||||||||||||||||| | ||||||||    
T  12734952 tggggtcgactacatggatcaaattacaccatagtgttctatca 12734909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 26671016 - 26670977
Alignment:
Q  5 gtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  26671016 gtcggctacatggatcaaattacaccattatattctatca 26670977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33504476 - 33504433
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||| |||||||||||||| ||||||| ||||||||    
T  33504476 tggggtcggctagatggatcaaattacgccataatgttctatca 33504433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3635353 - 3635398
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  3635353 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 3635398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11992138 - 11992183
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    ||||||| |||||||||||||||| || ||||||| ||||||||||    
T  11992138 tggggtcagctacatggatcaaataacgccataatgttctatcaaa 11992183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36366888 - 36366847
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    |||||| || ||||||||||||||||||||||||| ||||||    
T  36366888 tggggttggatacatggatcaaattacaccataatgttctat 36366847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38430136 - 38430091
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  38430136 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 38430091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41197257 - 41197302
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||| ||||||||||||||| || ||||||| ||||||||||    
T  41197257 tggggtcgactacatggatcaaatgacgccataatgttctatcaaa 41197302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43573160 - 43573193
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataa 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  43573160 tggggtcggctacatggatcaaattacgccataa 43573193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12520092 - 12520124
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccata 33  Q
    ||||||||||||||||||||||||||| |||||    
T  12520092 tggggtcggctacatggatcaaattacgccata 12520124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 19336930 - 19336966
Alignment:
Q  8 ggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  19336930 ggctacatggatcaaattacgccataatgttctatca 19336966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 32364954 - 32364994
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||| ||||||| ||||||||||||||||||| ||||||||    
T  32364954 ggtcagctacattgatcaaattacaccataatgttctatca 32364994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39709231 - 39709263
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccata 33  Q
    ||||||||||||||||||||||||||| |||||    
T  39709231 tggggtcggctacatggatcaaattacgccata 39709263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 39123399 - 39123441
Alignment:
Q  2 ggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  39123399 ggggtcggctacatggatcaaattacaccataatgttctatca 39123441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4590562 - 4590605
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  4590562 tggggtcggctacatggatcaaattacaccatattgttctatca 4590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17269019 - 17269062
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  17269019 tggggtcggctacatggatcaaattacgccataatgttctatca 17269062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21769741 - 21769784
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  21769741 tggggtcggctacatggatcaaattacgccataatgttctatca 21769784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28090724 - 28090767
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  28090724 tggggtcggctacatggatcaaattacgccataatgttctatca 28090767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41560481 - 41560438
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  41560481 tggggtcggctacatggatcaaattacgccataatgttctatca 41560438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 48865737 - 48865780
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  48865737 tggggttggctacatggatcaaattacaccataatattctatca 48865780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50257822 - 50257779
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  50257822 tggggttggctacatggatcaaattacaccataatgttctatca 50257779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 27704201 - 27704159
Alignment:
Q  2 ggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||| ||||||| ||||||||    
T  27704201 ggggtcggctacatggatcaaattacgccataatgttctatca 27704159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37462906 - 37462947
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  37462906 tggggtcggctacatggatcaaattacgccataatgttctat 37462947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 10200339 - 10200379
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  10200339 ggtcggctacatggatcaaattacaccatgatgttctatca 10200379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 25715359 - 25715399
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  25715359 ggtcggctacatggatcaaattacgccataatattctatca 25715399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 27072520 - 27072560
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  27072520 ggtcggctacatggatcaaattacgccataatgttctatca 27072560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2429659 - 2429702
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||    
T  2429659 tggggtcggctacgtggatcaaattacgccataatgttctatca 2429702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8796461 - 8796418
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||    
T  8796461 tggggtcggctacatggattaaattacgccataatgttctatca 8796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22175397 - 22175354
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  22175397 tggggtcggctacatggatcaaattctaccataatgttctatca 22175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28511831 - 28511874
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||    
T  28511831 tggggtcggctacattgatcaaattacgccataatgttctatca 28511874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37294138 - 37294181
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||    
T  37294138 tggggtcagctacatggatcaaattacgccataatgttctatca 37294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37429929 - 37429972
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||||| ||| | ||||||    
T  37429929 tggggtcggctacatggatcaaattacaccacaatgtgctatca 37429972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40568440 - 40568483
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||    
T  40568440 tggggttggctacatggatcaaattacgccatagttttctatca 40568483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44941806 - 44941849
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  44941806 tggggtcggctacatggatcaaattacgccatagtgttctatca 44941849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52532646 - 52532689
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||    
T  52532646 tggggtcggctacatgaatcaaattacgccataatgttctatca 52532689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52981437 - 52981480
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| ||||||| |||||||||||||||||||| ||||||||    
T  52981437 tggggttggctacaaggatcaaattacaccataatattctatca 52981480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34444608 - 34444574
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  34444608 tggggtcggctacatagatcaaattacaccataat 34444574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39140767 - 39140725
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatc 43  Q
    |||||||||||||||| |||||||||| ||||||| |||||||    
T  39140767 tggggtcggctacatgaatcaaattacgccataatgttctatc 39140725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2544845 - 2544804
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||||||||||||||||||||||  ||||||| ||||||    
T  2544845 tggggtcggctacatggatcaaattatgccataatgttctat 2544804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37311785 - 37311830
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  37311785 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 37311830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 39318379 - 39318338
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||| ||||| | ||||||||    
T  39318379 gggtcggctacatggatcaaattacgccatagtgttctatca 39318338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26299320 - 26299288
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccata 33  Q
    ||||||||||||||||||||||||||| |||||    
T  26299320 tggggtcggctacatggatcaaattacgccata 26299288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29129036 - 29128992
Alignment:
Q  1 tggggtcggctacatgg-atcaaattacaccataattttctatca 44  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||    
T  29129036 tggggtcggctacatgggatcatattacaccataatgttctatca 29128992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43481828 - 43481856
Alignment:
Q  1 tggggtcggctacatggatcaaattacac 29  Q
    |||||||||||||||||||||||||||||    
T  43481828 tggggtcggctacatggatcaaattacac 43481856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52561619 - 52561659
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttcta 41  Q
    ||||||||||||||||||||||||| | ||||||| |||||    
T  52561619 tggggtcggctacatggatcaaatttcgccataatgttcta 52561659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25891140 - 25891099
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  25891140 tggggtcggctacatggatcaaattacaccataatgttctat 25891099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2885752 - 2885795
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||||||||| | ||||||||    
T  2885752 tggggtcggctacatggatcaaattacaccatagtgttctatca 2885795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1011298 - 1011256
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatc 43  Q
    ||||||||||||||| ||||||||||||||||||| |||||||    
T  1011298 tggggtcggctacatagatcaaattacaccataatgttctatc 1011256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47852339 - 47852298
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  47852339 tggggtcggctacatggatcaaattacgccataatgttctat 47852298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 33281133 - 33281097
Alignment:
Q  7 cggctacatggatcaaattacaccataattttctatc 43  Q
    ||||||||||||||||||||||||||||| |||||||    
T  33281133 cggctacatggatcaaattacaccataatgttctatc 33281097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34029706 - 34029750
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaa 45  Q
    |||||| |||||||||||||||||||| ||||||| |||||||||    
T  34029706 tggggttggctacatggatcaaattacgccataatgttctatcaa 34029750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14057730 - 14057687
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||    
T  14057730 tggggttggctacatggatcaaattaccccataatgttctatca 14057687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14367758 - 14367715
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||    
T  14367758 tggggttggctacatggatcaaattaccccataatgttctatca 14367715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 28627967 - 28628006
Alignment:
Q  5 gtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  28627967 gtcggctacatggatcaaattacgccataatgttctatca 28628006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37618197 - 37618154
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| |||||||| | ||||||||    
T  37618197 tggggtcggctacatggatcaaatgacaccatagtgttctatca 37618154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40979958 - 40980001
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  40979958 tggggtcggctacatggatcaaattacgccatagtgttctatca 40980001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45054333 - 45054376
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||    
T  45054333 tggggtcggctacatggaccaaattacgccataatattctatca 45054376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28708633 - 28708599
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  28708633 tggggtcggctacatggatcaaattacgccataat 28708599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42187693 - 42187660
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataa 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  42187693 tggggtcggctacatggatcaaattacgccataa 42187660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43281926 - 43281881
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  43281926 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 43281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 24376056 - 24376096
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| ||||||| ||| ||||    
T  24376056 ggtcggctacatggatcaaattacgccataatgttccatca 24376096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 36239833 - 36239869
Alignment:
Q  8 ggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  36239833 ggctacatggatcaaattacgccataatgttctatca 36239869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18130844 - 18130885
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  18130844 tggggtcggctacatggatcaaattacaccataatgttctat 18130885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 8364807 - 8364765
Alignment:
Q  2 ggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||| ||||||| ||||||||    
T  8364807 ggggtcggctacatggatcaaattacgccataatgttctatca 8364765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23888508 - 23888549
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  23888508 tggggtctgctacatggatcaaattacaccataatgttctat 23888549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 3210541 - 3210581
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  3210541 ggtcagctacatggatcaaattacaccataatgttctatca 3210581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34535 - 34578
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||    
T  34535 tggggtcagctacatggatcaaattacgccataatgttctatca 34578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 7337225 - 7337268
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||    
T  7337225 tggggtcggctacatggaccaaattacgccataatattctatca 7337268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12890827 - 12890784
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  12890827 tggggtcggctacatggatcaaattacgccatagtgttctatca 12890784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28085628 - 28085585
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| |||||||| | ||||||||    
T  28085628 tggggtcggctacatggatcaaatgacaccatagtgttctatca 28085585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31818783 - 31818740
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||||  |||||| ||||||||    
T  31818783 tggggtcggctacatggatcaaattacgacataatgttctatca 31818740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30643021 - 30642980
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  30643021 tggggtcggctacatagatcaaattactccataatgttctat 30642980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 34939350 - 34939317
Alignment:
Q  2 ggggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||| ||||||||||||||||||||||    
T  34939350 ggggtcggctatatggatcaaattacaccataat 34939317  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 30031505 - 30031465
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| ||||| | ||||||||    
T  30031505 ggtcggctacatggatcaaattacgccatagtgttctatca 30031465  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 418064 - 418107
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  418064 tggggtcggctacatggatcaaattacgccataatgttctatca 418107  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14668023 - 14667980
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||    
T  14668023 tggggtcggttacatggatcaaattacaccataatgttctatca 14667980  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30639746 - 30639787
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctat 42  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  30639746 tggggtcggctacatggatcaaattacaccacaatgttctat 30639787  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 28276483 - 28276447
Alignment:
Q  8 ggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28276483 ggctacatggatcaaattacaccatagttttctatca 28276447  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1275516 - 1275469
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaaca 48  Q
    |||||||||||||||||||||||| ||  |||||| ||||||||||||    
T  1275516 tggggtcggctacatggatcaaatgacgtcataatgttctatcaaaca 1275469  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20457025 - 20456982
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||| || ||||||| ||||||||    
T  20457025 tggggtcggctacatggatcaaatgacgccataatgttctatca 20456982  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38132588 - 38132545
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||    
T  38132588 tggggtcggccacatggatcaaattacgccataatgttctatca 38132545  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41894325 - 41894282
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||| |||||||||||||||||||||||||||| || |||||    
T  41894325 tggggttggctacatggatcaaattacaccataatgttgtatca 41894282  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27386592 - 27386558
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  27386592 tggggtcggctacatggatcaaattacgccataat 27386558  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 32442159 - 32442197
Alignment:
Q  5 gtcggctacatggatcaaattacaccataattttctatc 43  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  32442159 gtcggctacatggatcaaattacgccataatgttctatc 32442197  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 9235297 - 9235256
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||  ||||||| ||||||||    
T  9235297 gggtcggctacatggatcaaattatgccataatgttctatca 9235256  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13561416 - 13561461
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  13561416 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 13561461  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14911424 - 14911379
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  14911424 tggggtcggctacatggatcaaatgacgccatagtattctatcaaa 14911379  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 42576260 - 42576219
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||| |||| || ||||||||    
T  42576260 gggtcggctacatggatcaaattacgccattatgttctatca 42576219  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28236434 - 28236391
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  28236434 tggggtcggctacatagatcaaattacaccataatattctatca 28236391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35690523 - 35690480
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  35690523 tggggtcggctacatggatcaaattacgccataatgttctatca 35690480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36255552 - 36255595
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  36255552 tggggtcggccacatggatcaaattacaccataatgttctatca 36255595  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 26024883 - 26024923
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  26024883 ggtcggctacatggataaaattacaccataatgttctatca 26024923  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25575076 - 25575033
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||    
T  25575076 tggggtctgctacatggatcaaattacaccacaatgttctatca 25575033  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 37042696 - 37042739
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||  |||||||||| ||||||||||    
T  37042696 gggtcggctacatggatcaaacgacaccataatgttctatcaaa 37042739  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45209235 - 45209278
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||    
T  45209235 tggggtcggctacatggatcaaactacgccataatattctatca 45209278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15661902 - 15661936
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  15661902 tggggtcggctacatggatcaaattacgccataat 15661936  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21528540 - 21528495
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    ||||||||||||||||||||||||  ||||||| | ||||||||||    
T  21528540 tggggtcggctacatggatcaaatgccaccatagtgttctatcaaa 21528495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27450210 - 27450255
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  27450210 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 27450255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32479290 - 32479245
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  32479290 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 32479245  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 49939764 - 49939809
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattttctatcaaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  49939764 tggggtcggctacatggatcaaatgacgccatagtgttctatcaaa 49939809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 50862883 - 50862854
Alignment:
Q  1 tggggtcggctacatggatcaaattacacc 30  Q
    ||||||||||||||||||||||||||||||    
T  50862883 tggggtcggctacatggatcaaattacacc 50862854  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 11400477 - 11400509
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||||||||| |||||||||||||||    
T  11400477 gggtcggctacatggatgaaattacaccataat 11400509  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 11410204 - 11410236
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataat 35  Q
    ||||||||||||||||| |||||||||||||||    
T  11410204 gggtcggctacatggatgaaattacaccataat 11410236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 28467689 - 28467649
Alignment:
Q  2 ggggtcggctacatggatcaaattacaccataattttctat 42  Q
    |||||| ||||||||||||||||||| ||||||| ||||||    
T  28467689 ggggtccgctacatggatcaaattacgccataatgttctat 28467649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30634136 - 30634172
Alignment:
Q  1 tggggtcggctacatggatcaaattacaccataattt 37  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  30634136 tggggtcggctacatggatcaaattacgccattattt 30634172  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 47265228 - 47265268
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||| ||| | ||||||||    
T  47265228 ggtcggctacatggatcaaattacactatagtgttctatca 47265268  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 50967061 - 50967097
Alignment:
Q  4 ggtcggctacatggatcaaattacaccataattttct 40  Q
    ||||||||||||||||||||||||  |||||||||||    
T  50967061 ggtcggctacatggatcaaattacgacataattttct 50967097  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 48150 - 48189
Alignment:
Q  5 gtcggctacatggatcaaattacaccataattttctatca 44  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  48150 gtcggctacatggatcaaattacgccataatattctatca 48189  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 58258 - 58299
Alignment:
Q  3 gggtcggctacatggatcaaattacaccataattttctatca 44  Q
    |||||||||||||||||||||||||  |||||| ||||||||    
T  58258 gggtcggctacatggatcaaattacgacataatgttctatca 58299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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