View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_25 (Length: 415)
Name: NF0947_low_25
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 286 - 387
Target Start/End: Complemental strand, 26262659 - 26262557
Alignment:
| Q |
286 |
ctggtacaaaaaaccctgctattatta-cctcatattatttgtttgaaacattattctcttttctacaacacgaatctggaatctctagtagtatattct |
384 |
Q |
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| T |
26262659 |
ctggtacaaaaacccctgctattattaacctcatattatttgtttgaaacattattctcttttctacaacacgaatctggaatctcaagtagtatattgt |
26262560 |
T |
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| Q |
385 |
tcg |
387 |
Q |
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||| |
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| T |
26262559 |
tcg |
26262557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 26262804 - 26262724
Alignment:
| Q |
143 |
gaagaaatgtactattgttctccataatcgtcattttcttctttgcgttggtaaaatatgaaaatgaaatttgctagatcg |
223 |
Q |
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| T |
26262804 |
gaagaaatgtactattattctccataattgtcattttcttctttgcgttggtaaaatatgaaaatgaaatttgctagatcg |
26262724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 26262850 - 26262811
Alignment:
| Q |
116 |
ggttgcaacatattttatcaacgcaaagaagaaatgtact |
155 |
Q |
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| T |
26262850 |
ggttgcaacatattttaccaaggcaaagaagaaatgtact |
26262811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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