View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_26 (Length: 407)
Name: NF0947_low_26
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 286
Target Start/End: Original strand, 22158548 - 22158808
Alignment:
| Q |
26 |
atcaaattgtagatgccatggtttacttttctttgttgtagactaaaaacaagtactgattactcatttttcctatcttttatacttttttatgcgggaa |
125 |
Q |
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| T |
22158548 |
atcaaattgtagatgccatggattacttttctttgttgtagactaaaagcaagtactgattactcatttttcctatcttttatacttttttacgcgggaa |
22158647 |
T |
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| Q |
126 |
tcatgaaactgaagtgacgagcctttgttgtatctagatagatagatggatatcaaatcacatgtagttagattaggaattacaaaaataataaatgaag |
225 |
Q |
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| T |
22158648 |
tcatgaaactgaagtgacgagcctttgttgtatctagatagatagatagatatcaaatcacatgtagttagattaggaattacaaaaataataaatgaag |
22158747 |
T |
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| Q |
226 |
tttgatgcataatttttgaccattttcaagtcttccaatcttagatttccattataattta |
286 |
Q |
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| T |
22158748 |
tttgatgcataatttttgaccattttcaagtcttccaatcttagatttccattataattta |
22158808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 301 - 407
Target Start/End: Original strand, 22158885 - 22158991
Alignment:
| Q |
301 |
aagatagacacttacaatgcaaatgaagaaacttgtaatattaccaaatatataagtgataagaaacatgaggaagagaacaaaaagggaccattacaac |
400 |
Q |
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| T |
22158885 |
aagatagacatttacaatgcaaatgtagaaacttgtaatattaccaaatatataagtgataagaaacatgaggaagagaacaaaaagggaccattacaac |
22158984 |
T |
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| Q |
401 |
gtcacca |
407 |
Q |
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| T |
22158985 |
gttacca |
22158991 |
T |
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