View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_27 (Length: 399)
Name: NF0947_low_27
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 78 - 305
Target Start/End: Original strand, 40068559 - 40068786
Alignment:
| Q |
78 |
tgagatgaaccggatcacatagtttaattaagcgtataatgacattgatttttgaatcaatagttaacaatccttaatcgatggaattaatgaatactag |
177 |
Q |
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| T |
40068559 |
tgagatgaaccgaatcacatagtttaattaaacgtataatgacattgatttttgaatcaatagttaacaatccttaatcgatggaattaatgaatactag |
40068658 |
T |
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| Q |
178 |
tacatttccacctagcatgtgttaaatttaattttgggctaatatatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaatagag |
277 |
Q |
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| T |
40068659 |
tatatttccacctagcatgtgttaaatttaattttgggctaatatatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaatagag |
40068758 |
T |
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| Q |
278 |
gaattgggtttgaaatttcaagacaact |
305 |
Q |
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| T |
40068759 |
gaattgggtttgaaatttcaagacaact |
40068786 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 10898321 - 10898394
Alignment:
| Q |
222 |
tatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaatagaggaattgggtttgaaattt |
295 |
Q |
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| T |
10898321 |
tatatgtaggtggtggtctaaagaaactattgctgtggttaccggtggaaacagaggaattgggtttgagattt |
10898394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 44965414 - 44965497
Alignment:
| Q |
222 |
tatatataggtggtggtctaaggaaacaattgctgtggttactggtggaaatagaggaattgggtttgaaatttcaagacaact |
305 |
Q |
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| T |
44965414 |
tatataaaggtggtggtccaaggaaactattgccgtggttaccggtggaaaccgaggaattggttttgagatttcaagacaact |
44965497 |
T |
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