View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_low_29 (Length: 384)
Name: NF0947_low_29
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_29 |
 | |
|
| [»] chr3 (8 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0554 (1 HSPs) |
| |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 23140816 - 23140434
Alignment:
| Q |
1 |
tcgaaaagatgttagttatttttatccaattatattctcattagtttgtaagtgaactatactatgttagctagttttcttttccattgatatatgccat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23140816 |
tcgaaaagatgttatttatttttatccaattatattctcattagtttgtaagtgaactatactatgttagctagttttcttttccattgatatatgccat |
23140717 |
T |
|
| Q |
101 |
tctatactaagaacattttagtcaacaaatattattggcaaaattacacttttggtctcttaaattttaaggtttgttcggttttggtcccttaagttac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23140716 |
tctatactaagaacattttagtcaacaaatattattggcaatattacacttttggtctcttaaattttaaggtttgttccgttttggtcccttaagttac |
23140617 |
T |
|
| Q |
201 |
aatataagcactttaatccctttagttgtttcggttctgttttcctcccttaagttaaaaatattacacaaattgattttttatgttggtcatttaacta |
300 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |
|
|
| T |
23140616 |
aatataagcactttagtcccttaagtt-tttcggttctattttcctcccttaagttaaaaatactacacaaattgattttttatgtcggtcgtttaacta |
23140518 |
T |
|
| Q |
301 |
tgtctaaacatgtattatttacctggaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23140517 |
tgtctaaacatgtattatttacctggaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
23140434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 23024704 - 23024660
Alignment:
| Q |
340 |
ttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23024704 |
ttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
23024660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 23149190 - 23149146
Alignment:
| Q |
340 |
ttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23149190 |
ttattgttcaggacatttttggtgctggaggcgagacatcagcaa |
23149146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 23036613 - 23036558
Alignment:
| Q |
329 |
cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
|||| |||||| || | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23036613 |
cttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaa |
23036558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 23033145 - 23033087
Alignment:
| Q |
326 |
gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
||||||| |||||| || | ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23033145 |
gaccttattgatagctacttttcaggacatttttggtgctggaggcgagacatcagcaa |
23033087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 23039487 - 23039429
Alignment:
| Q |
326 |
gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
||||||| |||||| || | |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23039487 |
gaccttattgatagctacttttcaggacgtttttggtgctggaggtgagacatcagcaa |
23039429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 384
Target Start/End: Complemental strand, 23146365 - 23146308
Alignment:
| Q |
327 |
accttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
|||||| |||||| || | | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23146365 |
accttattgatagctactttacaggacatttttgctgctggaggtgagacatcagcaa |
23146308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 23017488 - 23017450
Alignment:
| Q |
346 |
ttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
23017488 |
ttcaggacattttcggtggtggaggtgagacatcagcaa |
23017450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 21780239 - 21780201
Alignment:
| Q |
346 |
ttcaggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21780239 |
ttcaggacatgtttggtgctggaggtgagacatcagcaa |
21780201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 6331 - 6366
Alignment:
| Q |
349 |
aggacatttttggtgctggaggtgagacatcagcaa |
384 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6331 |
aggacatttttggtgctggaggtgatacatcagcaa |
6366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 62579 - 62543
Alignment:
| Q |
346 |
ttcaggacatttttggtgctggaggtgagacatcagc |
382 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
62579 |
ttcaggacatgtttggtgctggaggtgatacatcagc |
62543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University