View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_31 (Length: 378)
Name: NF0947_low_31
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 38907192 - 38907559
Alignment:
| Q |
11 |
ttatactttttgcgatttatatgcaggacaagcaaaatatatccatttcatcttctaccttgacagtgatactgctgtctcagtttcaaaggaaatggtt |
110 |
Q |
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| T |
38907192 |
ttatactttttgcgatttatatgcaggacaagcaaaatatatccatttcatcttctaccttgacagtgatactgctgtctcagtttcaaaggaaatggtt |
38907291 |
T |
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| Q |
111 |
gagcaacttgaacttgctgatcagaatgtaaaattcatagctgagttaatcgatttgttattgataaaattggttcctgaatggaaaccttgtgtagcaa |
210 |
Q |
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| T |
38907292 |
gagcaacttgaacttgctgatcagaatgtaaaattcatagctgagttaatcgatttgttattgataaaattggttcctgaatggaaaccttgtgtagcaa |
38907391 |
T |
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| Q |
211 |
ttgatcatttggtttctgcaaataataaatggactagtgctagccaacagacagactcagagttggctaaaaacaacggaagctcaaaacattatactga |
310 |
Q |
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| T |
38907392 |
ttgatcatttggtttctgcaaatgataaatggactagtgctagccaacagacagactcagagttggctaaaaacaacggaagctcaaaacattatactga |
38907491 |
T |
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| Q |
311 |
agatgcaggcccctcaacctcattcggaatatcgtccgcgaaagagaacgttgacaatatggatttat |
378 |
Q |
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| T |
38907492 |
agatgcaggcccctcaacctcattcggaagatcttccgcgaaagagaacgttgacaatatggatttat |
38907559 |
T |
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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 43708435 - 43708618
Alignment:
| Q |
31 |
atgcaggacaagcaaaatatatccatttcatcttctaccttgacagtgatactgctgtctcagtttcaaaggaaatggttgagcaacttgaacttgctga |
130 |
Q |
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| T |
43708435 |
atgcagggcgagcaagaaatatccatttcatattctacctcgacagtgatacggccatgtcagtgtcaagtgaaatggttgagcaacttgaacttgccga |
43708534 |
T |
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| Q |
131 |
tcagaatgtaaaattcatagctgagttaatcgatttgttattgataaaattggttcctgaatggaaaccttgtgtagcaattga |
214 |
Q |
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| T |
43708535 |
gcataatgttaaattcatcgccgagttgattgatttgttattgacaacattgattcctgattggaaaccttgtgtagcgattga |
43708618 |
T |
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