View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_32 (Length: 376)
Name: NF0947_low_32
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 53 - 363
Target Start/End: Complemental strand, 9378908 - 9378580
Alignment:
| Q |
53 |
tatgtttcttcttctcctgcttctgctgaataactactatattggctatattccatgttttctaattcaaacatcatgtgaaggagaggaatgttttttg |
152 |
Q |
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| T |
9378908 |
tatgtttcttcttctcctgcttctgctgaataactactatattggctatattccatgttttctaattcaaacatcatgtgaaggagaggaatgttttttg |
9378809 |
T |
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| Q |
153 |
aggtagagagtgtgtttgtgtttgtgt------------------ctttgccttgtgatgatatgcatgtatctatatatattggctttaagttatttga |
234 |
Q |
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| T |
9378808 |
aggtagagagtgtgtttgtgtttgtgtttgtgtttgtgtttgtgtctttgccttgtgatgatatgcatgtatctatatatattggctttaagttatttga |
9378709 |
T |
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| Q |
235 |
gttcttatcatgaggggaagattaaactcatcaattgctagctttatatccaaaacttattggtcctgctacacaattttcttccacctgtgcattgtga |
334 |
Q |
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| T |
9378708 |
gttcttatcatgaggggaagattaaactcatcaattgctagctttatatccaaaacttattggtcctgctacacaattttcttccacctgtgcattgtga |
9378609 |
T |
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| Q |
335 |
atattacctatttttcctttttctcatct |
363 |
Q |
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| T |
9378608 |
atattacctatttttcctttttcccatct |
9378580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 8185779 - 8185709
Alignment:
| Q |
232 |
tgagttcttatcatgaggggaagattaaactca-tcaattgctagctttatatccaaaacttattggtcct |
301 |
Q |
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| T |
8185779 |
tgagttcttatcatgaggatcagatttaaccccctcaattgctagctttatatccaaaactcattggtcct |
8185709 |
T |
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