View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0947_low_34 (Length: 369)

Name: NF0947_low_34
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0947_low_34
NF0947_low_34
[»] chr4 (2 HSPs)
chr4 (8-275)||(49553161-49553428)
chr4 (13-65)||(17357051-17357103)
[»] chr2 (11 HSPs)
chr2 (8-60)||(14575201-14575253)
chr2 (8-60)||(14520122-14520174)
chr2 (17-60)||(15023636-15023679)
chr2 (17-65)||(14476149-14476197)
chr2 (28-62)||(14567247-14567281)
chr2 (32-60)||(13707181-13707209)
chr2 (28-60)||(14144911-14144943)
chr2 (28-60)||(14162262-14162294)
chr2 (28-60)||(14485239-14485271)
chr2 (17-57)||(14502183-14502223)
chr2 (28-60)||(14552210-14552242)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 49553428 - 49553161
Alignment:
Q  8 cgaagaatatcagaagtagtagcacctttggagagtaaaaattgaaactttggtaaaagtagcttgttggggtcgaggcataagagtaagcaaggttccc 107  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49553428 cgaacaatatcagaagtagaagcacctttggagagtaaaaattgaaactttggtaaaagtatcttgttggggtcgaggcataagagtaagcaaggttccc 49553329  T
Q  108 ttttgatgatattacgaatttgagtgttggagaagccatgggttgtgaagagggcgataactaaatcgggtttttgggaatcggagagagtgagcttgcg 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||    
T  49553328 ttttgatgatattacgaatttgagtgttggagaagccatgggttgtgaagagggcgataactgaatccggtttttgggtatcggagagagtgagcttgcg 49553229  T
Q  208 agaaacattgagtgcggtttgaggggagagaccgtaattgttgatgaggtaagagacggtgaaagagt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49553228 agaaacattgagtgcggtttgaggggagagaccgtaattgttgatgaggtaagagacggtgaaagagt 49553161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 17357051 - 17357103
Alignment:
Q  13 aatatcagaagtagtagcacctttggagagtaaaaattgaaactttggtaaaa 65  Q
    ||||||||| | ||||||||||||||| || ||||||| ||||||||| ||||    
T  17357051 aatatcagatgaagtagcacctttggatagaaaaaattcaaactttggcaaaa 17357103  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 14575253 - 14575201
Alignment:
Q  8 cgaagaatatcagaagtagtagcacctttggagagtaaaaattgaaactttgg 60  Q
    |||||||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  14575253 cgaagaatgtcagaggtagaagcacctttggagagtaaaaattgaaactttgg 14575201  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 14520174 - 14520122
Alignment:
Q  8 cgaagaatatcagaagtagtagcacctttggagagtaaaaattgaaactttgg 60  Q
    |||| ||||||||| | || |||||||||||||||||||||||||||||||||    
T  14520174 cgaataatatcagaggaagaagcacctttggagagtaaaaattgaaactttgg 14520122  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 15023679 - 15023636
Alignment:
Q  17 tcagaagtagtagcacctttggagagtaaaaattgaaactttgg 60  Q
    |||||||||| ||| |||||||||||||||||||||||||||||    
T  15023679 tcagaagtagaagcgcctttggagagtaaaaattgaaactttgg 15023636  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 14476149 - 14476197
Alignment:
Q  17 tcagaagtagtagcacctttggagagtaaaaattgaaactttggtaaaa 65  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||| ||||    
T  14476149 tcagatgtagaagcacctttggagagaaaaaattgaaactttggcaaaa 14476197  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 14567281 - 14567247
Alignment:
Q  28 agcacctttggagagtaaaaattgaaactttggta 62  Q
    ||||||||||| |||||||||||||||||||||||    
T  14567281 agcacctttggcgagtaaaaattgaaactttggta 14567247  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 13707181 - 13707209
Alignment:
Q  32 cctttggagagtaaaaattgaaactttgg 60  Q
    |||||||||||||||||||||||||||||    
T  13707181 cctttggagagtaaaaattgaaactttgg 13707209  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 14144943 - 14144911
Alignment:
Q  28 agcacctttggagagtaaaaattgaaactttgg 60  Q
    ||||||||||||||| |||||||||||||||||    
T  14144943 agcacctttggagagaaaaaattgaaactttgg 14144911  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 14162262 - 14162294
Alignment:
Q  28 agcacctttggagagtaaaaattgaaactttgg 60  Q
    ||||||||||||||| |||||||||||||||||    
T  14162262 agcacctttggagagaaaaaattgaaactttgg 14162294  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 14485271 - 14485239
Alignment:
Q  28 agcacctttggagagtaaaaattgaaactttgg 60  Q
    ||||||||||||||| |||||||||||||||||    
T  14485271 agcacctttggagagaaaaaattgaaactttgg 14485239  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 14502223 - 14502183
Alignment:
Q  17 tcagaagtagtagcacctttggagagtaaaaattgaaactt 57  Q
    ||||| |||| ||||||||||||||| ||||||||||||||    
T  14502223 tcagaggtagaagcacctttggagagaaaaaattgaaactt 14502183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 14552242 - 14552210
Alignment:
Q  28 agcacctttggagagtaaaaattgaaactttgg 60  Q
    ||||||| |||||||||||||||||||||||||    
T  14552242 agcacctatggagagtaaaaattgaaactttgg 14552210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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