View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_36 (Length: 358)
Name: NF0947_low_36
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 17088495 - 17088412
Alignment:
| Q |
138 |
catagatcatggaaatcacagttatccattgactaaaagtgcatgcctttgagccattatttccacataaaaatagtcatatatgg |
223 |
Q |
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| T |
17088495 |
catagatcatgcaaatcacagttatccattgactaaaagtgc-tg-ctttgagccattatttccacataaaaatattcatatatgg |
17088412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 17088251 - 17088219
Alignment:
| Q |
216 |
atatatggacattgtggaccaaaatatgaatgt |
248 |
Q |
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| T |
17088251 |
atatatggacattgtggacaaaaatatgaatgt |
17088219 |
T |
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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 29268973 - 29269091
Alignment:
| Q |
141 |
agatcatggaaatcacagttatccattgactaaaagtgcatgcctttgagccattatttccacataaaaatagtcatatatggacattgtgga-ccaaaa |
239 |
Q |
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| T |
29268973 |
agatcatggtaattacagtaagccaatgactaaaagtgcattcctttgagccattatttccacataaaaagaagtgtaaatgaacattatggatcaaaaa |
29269072 |
T |
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| Q |
240 |
tatgaatgttataagtgaa |
258 |
Q |
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| T |
29269073 |
tttgaatgttataagtgaa |
29269091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 5103828 - 5103760
Alignment:
| Q |
179 |
catgcctttgagccattatttccacataaaaatagtcatatatggacattgtggaccaaa-atatgaat |
246 |
Q |
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| T |
5103828 |
catgcctttgagccattatttcaacataaatagaatcatatatggaacttgtggatcaaatatatgaat |
5103760 |
T |
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