View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_38 (Length: 357)
Name: NF0947_low_38
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 11224948 - 11224626
Alignment:
| Q |
30 |
atactacatgcacaacatttaatgaacttaacacacccaaaagtatacttacagctatagcttttccttcttcgttcacataatttccatcattctttat |
129 |
Q |
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| T |
11224948 |
atactacatgcacaacatttaatcaacttaacacacccaaaagtatacttacaactattgcttttccttcttcgttcacataatttccatcattctttat |
11224849 |
T |
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| Q |
130 |
taaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagc |
229 |
Q |
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| T |
11224848 |
taaagttgacaaaataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagc |
11224749 |
T |
|
| Q |
230 |
tctgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggagtttaagcttctta |
329 |
Q |
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| T |
11224748 |
tttgttgggatacataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggactttaagcttctta |
11224649 |
T |
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| Q |
330 |
cgattttcggtattcatctcact |
352 |
Q |
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| T |
11224648 |
cgattttcggtattcttctcact |
11224626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 11225489 - 11225433
Alignment:
| Q |
31 |
tactacatgcacaacatttaatgaacttaacacacccaaaagtatacttacagctata |
88 |
Q |
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| T |
11225489 |
tactacatgcacaacatttaatcaacc-aacacacccaaaagtatacttacagctata |
11225433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 11225295 - 11225243
Alignment:
| Q |
34 |
tacatgcacaacatttaatgaacttaacacacccaaaagtatacttacagctat |
87 |
Q |
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|||||||| |||||||||| || | |||||||||||||||||| |||||||||| |
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| T |
11225295 |
tacatgcataacatttaatcaa-tcaacacacccaaaagtatatttacagctat |
11225243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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