View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_42 (Length: 349)
Name: NF0947_low_42
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 68 - 331
Target Start/End: Complemental strand, 7660110 - 7659841
Alignment:
| Q |
68 |
atatcatattttcagaaaaatgtgagtagtatat--ttttaaataaaattcaaatgagtattaattttctgattacagttagtcctgcaaaatcatgtga |
165 |
Q |
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| T |
7660110 |
atatcatattttcagaaaaatgtgagtagtatatatttttaaataaaattcaaatgagtattaattttctgattacagttagtcctgcaaaatcatgtga |
7660011 |
T |
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| Q |
166 |
ctctcacatagtcacataaatttggtggagaattatatataagaattttaattaacggagagagttataatccatagaaatgatattgattgtgcaatat |
265 |
Q |
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| T |
7660010 |
ctctcacatagtcacatgaatttggtggagaattatatataagaattttaattaacggagagagttataatccatagaaatgatattgatagtgcaatat |
7659911 |
T |
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| Q |
266 |
tatatgttgaaattgagaaaatggt----attaactaactaacctgacgcaagtgtttgaattcttccat |
331 |
Q |
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| T |
7659910 |
tatatgttgaaattgagaaaatgatattaattaactaactaacctgacgcaagtgtttgaattcttccat |
7659841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 7623781 - 7623858
Alignment:
| Q |
268 |
tatgttgaaattgagaaaatggtattaactaactaacctgacgcaagtgtttgaattcttccataatattgttggaga |
345 |
Q |
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| T |
7623781 |
tatgttgaaattgagaaaatgatattaattaactaacctgacgcaagtgtttgaattcttccatgactttgttggaga |
7623858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 7660175 - 7660134
Alignment:
| Q |
29 |
agtacagttaatataagcaaaacttgttttacgtaacatata |
70 |
Q |
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| T |
7660175 |
agtacagttaatataagcaaaacttgttttacgtaacatata |
7660134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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