View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_low_43 (Length: 348)
Name: NF0947_low_43
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 38224915 - 38225222
Alignment:
| Q |
13 |
aatataatataggttggaaaacaaggccgacaatgcatcaaactatactattctgtcacgggacggctatctggttgaagaagacattcttcatatcagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38224915 |
aatataatataggttggaaaacaaggccgacaatgcatcaaactatactattctgtcacgggacggctatctggttgaagaagacattcttcatatcagg |
38225014 |
T |
|
| Q |
113 |
ctatcacactagccatttgaatttatattaattaattaattaaattctcaaacaatttttgctacaagtgtaattaaaatcagacaatactacgattttt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38225015 |
ctatcacactagccacttgaatttatattaattaattaattaaattctcaaacaatttttgctacaagtgtaattaaaatcagacaatactacgattttt |
38225114 |
T |
|
| Q |
213 |
aggaaaccaattatgcatgcaaagtgtgttatagagaccaagccaagccacacccgtttcaaaaataagctgcagttggcaagttcgtctcaaatgtttg |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38225115 |
aggaaaccaattatgcatgcaaagtctgttatagagaccaagccaagccacacccgtttcaaaaataagctgcacttggcaagttcgtctcaaatgtttg |
38225214 |
T |
|
| Q |
313 |
aagcaact |
320 |
Q |
| |
|
|||||||| |
|
|
| T |
38225215 |
aagcaact |
38225222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University