View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0947_low_45 (Length: 345)

Name: NF0947_low_45
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0947_low_45
NF0947_low_45
[»] chr2 (8 HSPs)
chr2 (81-250)||(17213335-17213504)
chr2 (163-231)||(10562442-10562510)
chr2 (187-226)||(13849874-13849913)
chr2 (166-225)||(32323677-32323736)
chr2 (173-235)||(32901114-32901176)
chr2 (187-236)||(37116742-37116791)
chr2 (162-226)||(479132-479196)
chr2 (162-226)||(15677450-15677514)
[»] chr3 (5 HSPs)
chr3 (165-220)||(3035581-3035636)
chr3 (164-226)||(34266600-34266662)
chr3 (163-226)||(44873956-44874020)
chr3 (164-226)||(29698013-29698075)
chr3 (162-210)||(34750675-34750723)
[»] chr8 (7 HSPs)
chr8 (164-219)||(38238939-38238994)
chr8 (161-231)||(9706639-9706708)
chr8 (164-226)||(11060999-11061061)
chr8 (162-236)||(26628856-26628930)
chr8 (164-226)||(34046873-34046935)
chr8 (178-220)||(35593693-35593734)
chr8 (186-231)||(33751244-33751289)
[»] chr7 (5 HSPs)
chr7 (162-213)||(46392609-46392660)
chr7 (171-231)||(6737258-6737318)
chr7 (162-210)||(32049433-32049481)
chr7 (162-236)||(41480638-41480712)
chr7 (166-226)||(44820756-44820816)
[»] chr4 (17 HSPs)
chr4 (165-226)||(9840410-9840471)
chr4 (164-236)||(47596760-47596832)
chr4 (164-226)||(36408748-36408810)
chr4 (164-226)||(36422914-36422976)
chr4 (173-234)||(25396065-25396126)
chr4 (162-226)||(8735412-8735476)
chr4 (162-226)||(39683871-39683935)
chr4 (175-219)||(51978794-51978838)
chr4 (170-225)||(34284071-34284126)
chr4 (164-221)||(35381577-35381634)
chr4 (165-226)||(50623440-50623501)
chr4 (186-226)||(40411990-40412030)
chr4 (162-226)||(44069054-44069118)
chr4 (166-226)||(45725563-45725623)
chr4 (162-226)||(47428552-47428616)
chr4 (162-226)||(53599943-53600007)
chr4 (162-226)||(56576260-56576324)
[»] chr6 (5 HSPs)
chr6 (162-236)||(847816-847890)
chr6 (166-226)||(1252189-1252249)
chr6 (187-226)||(24356211-24356250)
chr6 (186-220)||(21887748-21887782)
chr6 (186-226)||(879308-879348)
[»] chr5 (8 HSPs)
chr5 (164-226)||(6007887-6007949)
chr5 (187-226)||(5119205-5119244)
chr5 (164-226)||(4985328-4985390)
chr5 (164-226)||(10359388-10359450)
chr5 (164-226)||(14793943-14794005)
chr5 (162-226)||(9076073-9076137)
chr5 (162-226)||(31802790-31802854)
chr5 (162-210)||(40927155-40927203)
[»] chr1 (7 HSPs)
chr1 (164-226)||(32168465-32168527)
chr1 (164-226)||(36318375-36318437)
chr1 (187-236)||(51613456-51613505)
chr1 (162-210)||(8973620-8973668)
chr1 (186-226)||(44818498-44818538)
chr1 (176-236)||(49756665-49756725)
chr1 (162-226)||(49908335-49908399)
[»] scaffold0280 (1 HSPs)
scaffold0280 (164-226)||(8176-8238)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 17213504 - 17213335
Alignment:
Q  81 acagacacatatctacccgtgtcatgggaactttcgggtacacagttttcttgcctgaaatatctgtcgtttttgcaaacgaattttgtttctatttatt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17213504 acagacacatatctacccgtgtcatgggaactttcgggtacacagttttcttgcctgaaatatctgtcgtttttgcaaacgaattttgtttctatttatt 17213405  T
Q  181 tgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactcttatcttttattgcaat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17213404 tgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactcttatcttttattgcaat 17213335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 10562510 - 10562442
Alignment:
Q  163 attttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatac 231  Q
    ||||||||||||||||||||| |||||||| ||||||| || ||||||| ||| |||| ||||| ||||    
T  10562510 attttgtttctatttatttgtcgttttcaatgttcaatacaacattaacaatttttttgtcaataatac 10562442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 13849913 - 13849874
Alignment:
Q  187 tttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  13849913 tttcaaagttcaatgcatcattaaatgttgttttatcaat 13849874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 32323677 - 32323736
Alignment:
Q  166 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaa 225  Q
    ||||| || ||||||||| ||||||||||||||||||| ||| || ||||||||| ||||    
T  32323677 ttgttcctctttatttgtcgttttcaaagttcaatgcaacatcaattattgttttgtcaa 32323736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 32901114 - 32901176
Alignment:
Q  173 tatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctt 235  Q
    |||||| |||| ||||||||||||||||||| |||||| |  || ||||||||| ||||||||    
T  32901114 tatttagttgttgttttcaaagttcaatgcaacattaattgatgatttatcaataatactctt 32901176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 37116791 - 37116742
Alignment:
Q  187 tttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 236  Q
    ||||||||||||||||| |||||| | |||||||||||||| ||| ||||    
T  37116791 tttcaaagttcaatgcaacattaaatgttgttttatcaatcttaccctta 37116742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 479196 - 479132
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  479196 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatgttgttttatcaat 479132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 15677514 - 15677450
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| |||| ||||||||||    
T  15677514 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatattattttatcaat 15677450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 165 - 220
Target Start/End: Complemental strand, 3035636 - 3035581
Alignment:
Q  165 tttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgtttt 220  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||    
T  3035636 tttgtttctatttatttgtcgttttcaaagttcaatgcaacattaaatattgtttt 3035581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 34266662 - 34266600
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||  |||||||||||||||||| |||||| | |||||||||||||    
T  34266662 ttttgtttctatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttatcaat 34266600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 44874020 - 44873956
Alignment:
Q  163 attttgtttctatttatttgta-gttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||||||| ||||| |||| ||||||   ||||||||||||||| ||||||    
T  44874020 attttgtttctatttatttgtacgtttttaaaggtcaatgggacattaactattgtttaatcaat 44873956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 29698013 - 29698075
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||| ||||||| ||||  ||||||||||||||||||  ||||| | |||||||||||||    
T  29698013 ttttgttcctatttaattgtcattttcaaagttcaatgcaatattaaatgttgttttatcaat 29698075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 34750675 - 34750723
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 210  Q
    ||||||||||||| |||  ||| ||||||||||||||||| ||||||||    
T  34750675 aattttgtttctaattaactgtcgttttcaaagttcaatgtatcattaa 34750723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 38238939 - 38238994
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttt 219  Q
    ||||||||||||| ||||||  |||||||||||||||||| |||||||||||||||    
T  38238939 ttttgtttctattcatttgtcattttcaaagttcaatgcaacattaactattgttt 38238994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 9706639 - 9706708
Alignment:
Q  161 gaattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatac 231  Q
    |||||||||||||||||| |||   |||||||| ||||||||| |||||||||||||||| ||||||||||    
T  9706639 gaattttgtttctatttacttgccattttcaaatttcaatgcaccattaactattgtttt-tcaatcatac 9706708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 11060999 - 11061061
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||| |||||||||||| ||||||||||||||||| |  ||||| ||||||||| |||||    
T  11060999 ttttgttcctatttatttgtcgttttcaaagttcaatgtaatattaattattgttttgtcaat 11061061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 26628856 - 26628930
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 236  Q
    |||||||||||  |||||||||  |||||||  ||||||||| |||||| ||||| ||||||||| |||| ||||    
T  26628856 aattttgtttcactttatttgtcattttcaagtttcaatgcaacattaattattgatttatcaataataccctta 26628930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 34046873 - 34046935
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||   ||||||||||||||||| |||||| |||||||||| ||||    
T  34046873 ttttgtttctatttaactgtcactttcaaagttcaatgcaacattaaatattgttttaccaat 34046935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 35593734 - 35593693
Alignment:
Q  178 atttgtagttttcaaagttcaatgcatcattaactattgtttt 220  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  35593734 atttgtagttttcaa-gttcaatgcaacattaactattgtttt 35593693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 33751244 - 33751289
Alignment:
Q  186 ttttcaaagttcaatgcatcattaactattgttttatcaatcatac 231  Q
    ||||||||||||||||||  ||||| ||||||||||||||| ||||    
T  33751244 ttttcaaagttcaatgcaatattaattattgttttatcaataatac 33751289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 46392660 - 46392609
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaacta 213  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  46392660 aattttgttcctatttatttgtcgttttcaaagttcaatgcaacattaacta 46392609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 6737318 - 6737258
Alignment:
Q  171 tctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatac 231  Q
    ||||||||||| |  ||||||||||||||||||  ||||| ||||||||||||||| ||||    
T  6737318 tctatttatttatcattttcaaagttcaatgcaatattaattattgttttatcaataatac 6737258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 32049433 - 32049481
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 210  Q
    ||||||||||||| ||| |||| ||||||||||||||||| ||||||||    
T  32049433 aattttgtttctaattaattgtcgttttcaaagttcaatgtatcattaa 32049481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 41480712 - 41480638
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 236  Q
    ||||||||| ||||| | ||||  |||| |||||||||||||  ||||||||||||||| ||||| |||| ||||    
T  41480712 aattttgttcctattaagttgtcattttgaaagttcaatgcaatattaactattgttttgtcaataataccctta 41480638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 44820816 - 44820756
Alignment:
Q  166 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||  |||  |||| ||||||||||||| |||||| || ||||||||||||    
T  44820816 ttgtttctatttaactgttatttttaaagttcaatgcaacattaaataatgttttatcaat 44820756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 9840471 - 9840410
Alignment:
Q  165 tttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||| ||||||||||||  ||||||||| |||||||| |||||||||||||||| |||||    
T  9840471 tttgttcctatttatttgtctttttcaaagctcaatgcaacattaactattgttttgtcaat 9840410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 47596832 - 47596760
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 236  Q
    ||||||||||||||| ||||  ||||||||||||||||||  ||| | |||||||||||||||  ||||||||    
T  47596832 ttttgtttctatttaattgtcattttcaaagttcaatgcaatattgagtattgttttatcaatattactctta 47596760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 36408748 - 36408810
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||| ||||||| ||||| |||||||||||||||||| |||||| | |||||||| ||||    
T  36408748 ttttgttcctatttaattgtaattttcaaagttcaatgcaacattaaatgttgttttaacaat 36408810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 36422914 - 36422976
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||| ||||||| ||||| |||||||||||||||||| |||||| | |||||||| ||||    
T  36422914 ttttgttcctatttaattgtaattttcaaagttcaatgcaacattaaatgttgttttaacaat 36422976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 25396126 - 25396065
Alignment:
Q  173 tatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactct 234  Q
    ||||||||||| |||||| ||||||||||||  ||||||||||||||| || || |||||||    
T  25396126 tatttatttgtcgttttccaagttcaatgcagaattaactattgttttgtcgataatactct 25396065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 8735412 - 8735476
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||||||||||| ||||   |||||||||||||||||  ||||| |||||||||| ||||    
T  8735412 aattttgtttctatttaattgtcactttcaaagttcaatgcaatattaaatattgttttaccaat 8735476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 39683935 - 39683871
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||  |||   ||| ||||||||||||| |||||| |||||||||||||||    
T  39683935 aattttgtttctatttaactgtcacttttaaagttcaatgcaacattaaatattgttttatcaat 39683871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 51978838 - 51978794
Alignment:
Q  175 tttatttgtagttttcaaagttcaatgcatcattaactattgttt 219  Q
    |||||||||  |||||||||||||||||| |||||||||||||||    
T  51978838 tttatttgtcattttcaaagttcaatgcaacattaactattgttt 51978794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 34284071 - 34284126
Alignment:
Q  170 ttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaa 225  Q
    |||||||||  ||| ||||||||||||||||||| ||||| |||||||||| ||||    
T  34284071 ttctatttacgtgtcgttttcaaagttcaatgcaacattatctattgttttctcaa 34284126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 35381634 - 35381577
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgtttta 221  Q
    ||||||||||||||| ||||   ||||||||||||||||| |||||| | ||||||||    
T  35381634 ttttgtttctatttaattgtcactttcaaagttcaatgcaacattaaatgttgtttta 35381577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 50623440 - 50623501
Alignment:
Q  165 tttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||| ||||   ||||||||||||||||| |||||| | |||||||| ||||    
T  50623440 tttgtttctatttaattgtcactttcaaagttcaatgcaacattaaatgttgttttaccaat 50623501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 40411990 - 40412030
Alignment:
Q  186 ttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||| | |||||| |||||||||||||||    
T  40411990 ttttcaaagttcaatgtaacattaaatattgttttatcaat 40412030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 44069054 - 44069118
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  44069054 aattttgttcctatttaagtgtcactttcaaagttcaatgcaacattaaatgttgttttatcaat 44069118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 45725563 - 45725623
Alignment:
Q  166 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||||||| ||||  |||| |||||||||||||  ||||| |||| ||||||||||    
T  45725563 ttgtttctatttaattgtcatttttaaagttcaatgcaatattaaatattattttatcaat 45725623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 47428552 - 47428616
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||| |||||||  ||| | ||||||||||||||||| |||||| | |||||||| ||||    
T  47428552 aattttgttcctatttaactgtcgctttcaaagttcaatgcaacattaaatgttgttttaccaat 47428616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 53600007 - 53599943
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| |||||||||| ||||    
T  53600007 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatattgttttaccaat 53599943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 56576324 - 56576260
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| |||||||||| ||||    
T  56576324 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatattgttttaccaat 56576260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 847816 - 847890
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 236  Q
    |||| |||| ||||||| ||||  |||||||||||||||||| |||||| ||||| ||| ||||| |||||||||    
T  847816 aattgtgttcctatttacttgtcattttcaaagttcaatgcaacattaattattgctttgtcaataatactctta 847890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 1252189 - 1252249
Alignment:
Q  166 ttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||| ||||||| ||||  |||||||||||||||||| |||||| |||||||||| ||||    
T  1252189 ttgttcctatttaattgtctttttcaaagttcaatgcaacattaaatattgttttaccaat 1252249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 24356250 - 24356211
Alignment:
Q  187 tttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  24356250 tttcaaagttcaatgcatcattaaatgttgttttatcaat 24356211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 21887782 - 21887748
Alignment:
Q  186 ttttcaaagttcaatgcatcattaactattgtttt 220  Q
    |||||||||||||||||| ||||||||||||||||    
T  21887782 ttttcaaagttcaatgcaacattaactattgtttt 21887748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 879308 - 879348
Alignment:
Q  186 ttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||| |||||| ||||||||| |||||    
T  879308 ttttcaaagttcaatgcaacattaattattgttttgtcaat 879348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 6007887 - 6007949
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||   |||||||||||||||||||||||| | |||||||||||||    
T  6007887 ttttgtttctatttaactgtcactttcaaagttcaatgcatcattaaatgttgttttatcaat 6007949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 5119205 - 5119244
Alignment:
Q  187 tttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  5119205 tttcaaagttcaatgcatcattaaatattgttttaccaat 5119244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 4985390 - 4985328
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||   ||||||||||||||||| |||||| || ||||||||||||    
T  4985390 ttttgtttctatttaactgtcactttcaaagttcaatgcaacattaaataatgttttatcaat 4985328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 10359450 - 10359388
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||  |||||||||||||||||| |||||| | |||||||| ||||    
T  10359450 ttttgtttctatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttaccaat 10359388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 14794005 - 14793943
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  14794005 ttttgtttctatttaaatgttactttcaaagttcaatgcaacattaaatgttgttttatcaat 14793943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 9076073 - 9076137
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||| |||||||  |||   ||||||||||||||||| |||||| | |||||||||||||    
T  9076073 aattttgttcctatttaactgtcactttcaaagttcaatgcaacattaaatgttgttttatcaat 9076137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 31802790 - 31802854
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    ||||||||||| |||||  |||  |||||||||||||||||| |||||| | |||||||| ||||    
T  31802790 aattttgtttcaatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttaccaat 31802854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 40927155 - 40927203
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 210  Q
    ||||||||||||| ||| |||| ||||||||| ||||||| ||||||||    
T  40927155 aattttgtttctaattaattgtcgttttcaaaattcaatgtatcattaa 40927203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 32168527 - 32168465
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||   |||||||||||||||||||||||| | |||||||||||||    
T  32168527 ttttgtttctatttaactgtcagtttcaaagttcaatgcatcattaaatgttgttttatcaat 32168465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 36318375 - 36318437
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  ||| | ||||||||||||||||| |||||| | |||||||||||||    
T  36318375 ttttgtttctatttaactgtcgctttcaaagttcaatgcaacattaaatgttgttttatcaat 36318437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 51613456 - 51613505
Alignment:
Q  187 tttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 236  Q
    |||||||||||||||||||||||| | |||||||||||||  ||||||||    
T  51613456 tttcaaagttcaatgcatcattaaatgttgttttatcaatattactctta 51613505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 8973668 - 8973620
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaa 210  Q
    ||||||||||||| |||  ||| ||||||||||||||||| ||||||||    
T  8973668 aattttgtttctaattaactgttgttttcaaagttcaatgtatcattaa 8973620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 44818498 - 44818538
Alignment:
Q  186 ttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||| |||||| |||||||||| ||||    
T  44818498 ttttcaaagttcaatgcaacattaaatattgttttaccaat 44818538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 49756665 - 49756725
Alignment:
Q  176 ttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaatcatactctta 236  Q
    |||||||| ||| ||||||||||||||| || ||| ||||||||| ||||| |||| ||||    
T  49756665 ttatttgttgttgtcaaagttcaatgcaacaataattattgttttgtcaattataccctta 49756725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 49908399 - 49908335
Alignment:
Q  162 aattttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||||  |||   ||| ||||||||||||| |||||| |||||||||| ||||    
T  49908399 aattttgtttctatttaactgtcacttttaaagttcaatgcaacattaaatattgttttaccaat 49908335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 8176 - 8238
Alignment:
Q  164 ttttgtttctatttatttgtagttttcaaagttcaatgcatcattaactattgttttatcaat 226  Q
    |||||||||||||||  |||  |||||||||||||||||| |||||| | |||||||| ||||    
T  8176 ttttgtttctatttaactgtcattttcaaagttcaatgcaacattaaatgttgttttaccaat 8238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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