View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_5 (Length: 647)
Name: NF0947_low_5
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 79 - 626
Target Start/End: Complemental strand, 4565177 - 4564623
Alignment:
| Q |
79 |
agaaattccacataaaataataaaatattcactataatatttaagtcaaaagactctcccatgtaatagaaaccatgcatgaataatccttataatgcac |
178 |
Q |
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| T |
4565177 |
agaaattccacataaaataataaaatgttcactataatatttaagtcaaaagactctctcatgtaatagaaaccatgcatgaataatccttataatgcac |
4565078 |
T |
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| Q |
179 |
ccacaatagtggttgcaaatctcacaatttatatctatatatcaaaaatacccaagtatgggaggaaaagtgagaacccatcaaagtgcaattctgagaa |
278 |
Q |
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| T |
4565077 |
ccacaatagtggttgcaaatctcacaatttagatctatatatcaaaagtacccaagtatgggaggaaaagtgagaacccatcaaagtgcaattctgagaa |
4564978 |
T |
|
| Q |
279 |
agtgagatatgtatgagaatatttgatcatgtgcatttgatcctgcagctttaaaccgaatatctctctatctatatccact-------ttttcttattt |
371 |
Q |
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| T |
4564977 |
agtgagatatgtatgagaatatttgatcatgtgcatttgatcctgcagctttaaaccgaatatctctctatctatatccacttgggtaattttcttattc |
4564878 |
T |
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| Q |
372 |
aattttcttttctattgggtaatgagtatacaaatccacttctccacctgtttaagttttttccctctgacaaaatccacatgctaaagaagagaggttg |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4564877 |
aattttcttttctattgggtaatgagtatacaaatccacttctccacctgtttaagttttttccctctgacaaaatccacatgctaaagaagagaggttg |
4564778 |
T |
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| Q |
472 |
aagcaacaggacccaccccacgttcacatggaagtggtaggaaggaaatgaccatatatgacccacacattcacatacacaactttcacttaaccttctt |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4564777 |
aagcaacaggacccaccccacgttcacatggaagtggtaggaaggaaatgaccatatatgacccacacattcacatacacaactttcacttaaccttctt |
4564678 |
T |
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| Q |
572 |
tctcttgtttctttattaaggaatttgattcttttaacccttcctagatctctct |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4564677 |
tctcttgtttctttattaaggaatttgattcttttaacccttcctatatctctct |
4564623 |
T |
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