View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0947_low_51 (Length: 324)

Name: NF0947_low_51
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0947_low_51
NF0947_low_51
[»] chr2 (1 HSPs)
chr2 (30-324)||(36453399-36453693)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 36453693 - 36453399
Alignment:
Q  30 ccaatttagttgttcccattcccaaataggttcaggttcatcgaccccattatttggtacatcattccaatttgtgccacttgaccctccaatattaaga 129  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36453693 ccaatttagttgttcccattcccaaataggttcaggttcatcaaccccattatttggtacatcattccaatttgtgccacttgaccctccaatattaaga 36453594  T
Q  130 gaagcatcatggtctctctctatccctcgagaagttgcatacaaatttgatccattgagctctgccaccacttgttgagtacttgttgaagcagcatgtt 229  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36453593 gaagcatcatggtctctctctatccctcgagaagttgcatacgagtttgatccattgagctctgccaccacttgttgagtacttgttgaagcagcatgtt 36453494  T
Q  230 gtaactccgtcgttggcctctctaatggtctacgatcaaacgaactaaagcttcctgatatcacataaacgcggcacaagctgaattcgcgtcgc 324  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  36453493 gtaactccgtcattggcctctctaatggtcttcgatcaaacgaactaaagcttcccgatatcacataaacgcgacacaagctgaattcgtgtcgc 36453399  T

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