View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_55 (Length: 310)
Name: NF0947_low_55
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 28706680 - 28706569
Alignment:
| Q |
100 |
gtcttagataggctccctattcgtgtgttccttg-ttataaacgagtcttgaatacggaggcctcgttgaattgtgttttctatgttggtggataagaga |
198 |
Q |
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| T |
28706680 |
gtcttagataggatccctactcgtgtgaacctttcttatagacgagttttgaatacggaggccatgttgaactgtgttttctatgttggtggataagaga |
28706581 |
T |
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| Q |
199 |
catcaattcacc |
210 |
Q |
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||| |||||||| |
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| T |
28706580 |
cattaattcacc |
28706569 |
T |
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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 51805611 - 51805668
Alignment:
| Q |
1 |
gctgttgcaagtttttcaacaatccaagttcttttagaatttgacctgtgaggaaatt |
58 |
Q |
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| T |
51805611 |
gctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
51805668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20017453 - 20017396
Alignment:
| Q |
1 |
gctgttgcaagtttttcaacaatccaagttcttttagaatttgacctgtgaggaaatt |
58 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||| || ||||||||| |
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| T |
20017453 |
gctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt |
20017396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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