View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_6 (Length: 572)
Name: NF0947_low_6
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 3 - 543
Target Start/End: Original strand, 7470955 - 7471494
Alignment:
| Q |
3 |
catgtcgaagaatattaaacagagacagttttataaaaacaaaagttcagtgcaacacaaaaatgcttatactaaaagaatgacttcgtaaatcaggatt |
102 |
Q |
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| T |
7470955 |
catgtagaaaaatattaaacattgacagttttataaaaacaaaagttcagtgcaacacaaaaatgcttatactaaaagaatgacttcgtaaatcaggatc |
7471054 |
T |
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| Q |
103 |
ccaaattgcttgacagtaaaaagaatgtttggtacagctaaaaagaaaaatgtgagaagaacttgaacaatggcacaaatgtaattttacctgataattg |
202 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7471055 |
ccaaattgcttgacagtaaaaaaaatgtttggtgcagctaaaaagaaaaatgcgagaagaacttgaacaatggcacaaatgtaattttacctgataattg |
7471154 |
T |
|
| Q |
203 |
tctgcggtgtcaaattggattcccatatttggttcaggattgatcccttccaggttgataagaacttcgtaatcctctctgtttcagaagaaaatccagc |
302 |
Q |
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| T |
7471155 |
tctgcggtgtcaaattggattcccatatttggttcaggattgatcccttccaggttgataagaacttcgtaatcctctctgtttccgaagaaaatccagc |
7471254 |
T |
|
| Q |
303 |
agatcccaccaaaaccaagtgctgtacgtgctctgggtgctacacataaatattaaaagatatatcagaataataattattatctttttgcaagagaaaa |
402 |
Q |
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| T |
7471255 |
agatcccaccaaaaccaagtgctgtacgtgctctgggtgctacacataaatattaaaagatatatcagaataataagtattatctttttgaaagagaaaa |
7471354 |
T |
|
| Q |
403 |
gggaggnnnnnnnnnngtccttttaatgcaatgtagaaggagattccaccttaagcgcgtatttggaagcaatataaccaccaaaagaatgccctagaag |
502 |
Q |
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| T |
7471355 |
ggga-gaaaaaaaaaagtccttttaatgcaatgtagaaggagattccaccttaagcgcgtatttggaagcaatataaccaccaaaagaatgccctagaag |
7471453 |
T |
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| Q |
503 |
tataaaattgctcaggtttttggctttcctccattcctcaa |
543 |
Q |
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| T |
7471454 |
tataaaattgctcaggtttttggctttcctccattcctcaa |
7471494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 450 - 541
Target Start/End: Original strand, 52872423 - 52872514
Alignment:
| Q |
450 |
accttaagcgcgtatttggaagcaatataaccaccaaaagaatgccctagaagtataaaattgctcaggtttttggctttcctccattcctc |
541 |
Q |
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| T |
52872423 |
accttgagcgcgtatttggaagcaacataaccaccaaaagaatgtccaagcagtatgaaattggtaagatttttggcttttctccattcctc |
52872514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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