View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_61 (Length: 282)
Name: NF0947_low_61
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 65 - 267
Target Start/End: Original strand, 49218170 - 49218373
Alignment:
| Q |
65 |
atccaaagatatgacagattctagttcattcttcatctccctccctgaagatatcaacttcaaaatcgcttcacttcttcaggttccaattt-ctaattt |
163 |
Q |
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| T |
49218170 |
atccaaagatatggcagattctagttcattcttcatctccctccctgaagatatcaacttcaaaatcgcttcacttcttcaggttccaattttctaattt |
49218269 |
T |
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| Q |
164 |
ccattttacctatatcatcatatcatgcatgctacaccttccatttccattttcattcatccttttacttctttcacgttttccaggtgcgtgatttgtg |
263 |
Q |
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| T |
49218270 |
ccattttacctatatcatcatatcatgcatgctacaccttccatttccattttcattcacccttttacttctttcacgttttccaggtgcgtgatttgtg |
49218369 |
T |
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| Q |
264 |
tgct |
267 |
Q |
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|||| |
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| T |
49218370 |
tgct |
49218373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 49218123 - 49218157
Alignment:
| Q |
9 |
acaggtacacctgatccttatggttatacaaactg |
43 |
Q |
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| T |
49218123 |
acaggtacacctgatccttatggttatacaaactg |
49218157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 45159516 - 45159444
Alignment:
| Q |
84 |
tctagttcattcttcatctccctccctgaagatatcaacttcaaaatcgcttcacttcttcaggttccaattt |
156 |
Q |
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| T |
45159516 |
tctatttcattcttcatctcccttgctgaagatatcaacaacaaaatcgcttcacttcttcttgttccaattt |
45159444 |
T |
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