View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_66 (Length: 278)
Name: NF0947_low_66
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_66 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 14231872 - 14231623
Alignment:
| Q |
29 |
aagaatcatgaaagagaatggtttgaaaggtgnnnnnnnttacatggaaaagaatgttaatttgattagagaaattttatgggaagatgattactatatg |
128 |
Q |
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| T |
14231872 |
aagaatcatgaaagagaatggtttgaaaggtgaaaagaattacatggaaaagaatgttaatttgattagagaaattttatgggaagatgattactatatg |
14231773 |
T |
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| Q |
129 |
attttagggatagagaagagttgttctattgaagagattaaaaaagcttataagaaattatctttgaaagttcatcctgataagaataaagcaccgggtt |
228 |
Q |
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| T |
14231772 |
attttagggttagagaagagttgttctattgaagagattagaaaagcttataagaaattatctttgaaagttcatcctgataagaataaagcaccgggtt |
14231673 |
T |
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| Q |
229 |
cggaagacgcatttaagaaagtttctaatgcttttcagtgtttgagtgat |
278 |
Q |
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| T |
14231672 |
cggaagacgcatttaagaaagtttctaatgcttttcagtgtttgagtgat |
14231623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 79 - 278
Target Start/End: Complemental strand, 14228209 - 14228010
Alignment:
| Q |
79 |
agaatgttaatttgattagagaaattttatgggaagatgattactatatgattttagggatagagaagagttgttctattgaagagattaaaaaagctta |
178 |
Q |
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| T |
14228209 |
agaatgttaagttgattagggaaattaaagggaaaagtgattattattcgattttagggttagagaagagttgttctgttgaagagattaggaaagctta |
14228110 |
T |
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| Q |
179 |
taagaaattatctttgaaagttcatcctgataagaataaagcaccgggttcggaagacgcatttaagaaagtttctaatgcttttcagtgtttgagtgat |
278 |
Q |
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| T |
14228109 |
taggaaattgtctttgaaagttcatcctgataagaataaagcaccgggttccgaagatgcgtttaagaaagtttctaaggcttttaagtgtttgagtgat |
14228010 |
T |
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