View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_69 (Length: 272)
Name: NF0947_low_69
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 7481669 - 7481488
Alignment:
| Q |
7 |
agttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctc |
106 |
Q |
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| T |
7481669 |
agttgaacttgatggttgttggttccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttgtcaagatcatctc |
7481570 |
T |
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| Q |
107 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7481569 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
7481488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 7129469 - 7129650
Alignment:
| Q |
7 |
agttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctc |
106 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
7129469 |
agttgaacttgatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattttccaccagcttttgaagatcatctc |
7129568 |
T |
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| Q |
107 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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| T |
7129569 |
tcatgttccagctttcaacaaccactgaacccagcttcccgatcagcttgtcaatcatgttgaacaaaagaccttcagccat |
7129650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 7527788 - 7527607
Alignment:
| Q |
7 |
agttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctc |
106 |
Q |
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| T |
7527788 |
agttgaacttgatggttgttggtgccctgctgctcttctgcatccaaaaccacagccttgatctcagacatattctccaccagcttgtcaagatcatctc |
7527689 |
T |
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| Q |
107 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||| || |||||||||||| |
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| T |
7527688 |
tcatgttccagcattgaacaaccactgaacctagcttcccgatcagcttctcaatcatgttgaacagaataccttcagccat |
7527607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 7494071 - 7493890
Alignment:
| Q |
7 |
agttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctc |
106 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
7494071 |
agttgaacttgatggttgttggttccttgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttttgaagatcatctc |
7493972 |
T |
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| Q |
107 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
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| T |
7493971 |
tcatgttccagccttcaacaaccatagaacccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccat |
7493890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 7519738 - 7519557
Alignment:
| Q |
7 |
agttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctc |
106 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
7519738 |
agttgaacttgatggttgttggttccttgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttttgaagatcatctc |
7519639 |
T |
|
| Q |
107 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
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| T |
7519638 |
tcatgttccagccttcaacaaccatagaacccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccat |
7519557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 7506352 - 7506198
Alignment:
| Q |
34 |
tgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctctcatgttccagcattcaacaaccacag |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| || |
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| T |
7506352 |
tgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagctagtcaagatcttctcacatgttccagccttcaacaaccatag |
7506253 |
T |
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| Q |
134 |
aacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
7506252 |
aacccagcttcccgatcagcttttgaatcatgttaaacagaagaccttcagccat |
7506198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 7722743 - 7722924
Alignment:
| Q |
7 |
agttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctc |
106 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
7722743 |
agttgaacttgatggttgttggttccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattctccaccagcttttgaagatcatctc |
7722842 |
T |
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| Q |
107 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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|||||||||| | |||||||||| || |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| |
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| T |
7722843 |
tcatgttccacccttcaacaaccgtggagcccagcttcccgatcagcttatcaatcatgttaaacagaagtccttcagccat |
7722924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 7714456 - 7714630
Alignment:
| Q |
7 |
agttgaacttcatggttgttggctccctgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagcttgtcaagatcatctc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
7714456 |
agttgaacttcatggttgttggctccctgctgct-------atccaaaatcacagccttgatctcatacatattatccaccatcttgtcaagatcatctc |
7714548 |
T |
|
| Q |
107 |
tcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatgttgaacaaaagaccttcagccat |
188 |
Q |
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|||||||||||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
7714549 |
tcatgttccagcattcaacacccattgaacccagcctcccgatcagcttctcaatcatgttgaacaaaagactttcagccat |
7714630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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