View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0947_low_74 (Length: 262)

Name: NF0947_low_74
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0947_low_74
NF0947_low_74
[»] chr1 (1 HSPs)
chr1 (1-94)||(32953409-32953502)
[»] chr8 (1 HSPs)
chr8 (1-93)||(37080980-37081072)
[»] chr2 (1 HSPs)
chr2 (1-77)||(36033506-36033582)
[»] chr5 (1 HSPs)
chr5 (2-95)||(27983801-27983891)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-79)||(229050-229128)
[»] chr7 (1 HSPs)
chr7 (1-93)||(7805795-7805887)


Alignment Details
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32953502 - 32953409
Alignment:
Q  1 cacaacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaataaaaaggaggtgatgact 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32953502 cacaacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaataaaaaggaggtgatgact 32953409  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 37080980 - 37081072
Alignment:
Q  1 cacaacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaataaaaaggaggtgatgac 93  Q
    ||||||||| ||||||||||||||||| ||||||||| | |||||||| |||  ||||||||| | |||| |||||||| |||| ||||||||    
T  37080980 cacaacaacaccaaaattaagagagtgagtggaggaggagagatctgggaattgaaggagtaatgaagctataaataaagaggatgtgatgac 37081072  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36033582 - 36033506
Alignment:
Q  1 cacaacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaata 77  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||  |||||| || | |||||||||||    
T  36033582 cacaacaacaccaaaattaagagagtgagtggaggagaagagatctggaaattgaaggagcaatgaagctgtaaata 36033506  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 27983801 - 27983891
Alignment:
Q  2 acaacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaataaaaaggaggtgatgactg 95  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||  ||||  ||||||||| | |||||||||||||   |||||||||||||    
T  27983801 acaacaacaccaaaattaagagagtgagtggaggagaagagatctaaaaattgaaggagtaatgaagctgtaaataaa---gaggtgatgactg 27983891  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 229050 - 229128
Alignment:
Q  1 cacaacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaataaa 79  Q
    |||||||| |||||||||||||||||||||| ||||| | |||| ||| |||  ||||||||| | |||| ||||||||    
T  229050 cacaacaatgccaaaattaagagagtgggtgaaggaggagagatatgggaattgaaggagtaatgaagctttaaataaa 229128  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 7805795 - 7805887
Alignment:
Q  1 cacaacaacgccaaaattaagagagtgggtggaggagaatagatctggaaatcaaaggagtaacggagctgtaaataaaaaggaggtgatgac 93  Q
    ||||||||| ||||||||||  ||| | ||||||||| | ||||  || |||  ||||||||||  ||||||||||||| |||||||||||||    
T  7805795 cacaacaacaccaaaattaaatgagcgagtggaggaggacagatacgggaattgaaggagtaacaaagctgtaaataaagaggaggtgatgac 7805887  T

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