View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_78 (Length: 260)
Name: NF0947_low_78
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_78 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 52334695 - 52334464
Alignment:
| Q |
1 |
catcattcacgcctacctaccacttacttacatacaacctgtattatattatattactacaacctcactactatacaattcacgaattctaagtttaact |
100 |
Q |
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| T |
52334695 |
catcattcacgcctacctaccacttaattacatacaacctgtattatattatattactacaaccacactactatacaattcacgaattctaagtttaact |
52334596 |
T |
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| Q |
101 |
tcaacaccgttagtaatggcacttccgtcagtgacagctttggagatcgagaactacgcattccctcccaccgtgaaaccacctggatccaccaacaact |
200 |
Q |
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| T |
52334595 |
tcaacaccgttagtaatggcacttccgtcagtgacagctttggagatcgagaactacgcattccctcccaccgtgaaaccacccggatccaccaacaact |
52334496 |
T |
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| Q |
201 |
tcttcctcggcggtgcaggagagagaggcatt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52334495 |
tcttcctcggcggtgcaggagagagaggcatt |
52334464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 52340539 - 52340471
Alignment:
| Q |
160 |
attccctcccaccgtgaaaccacctggatccaccaacaacttcttcctcggcggtgcaggagagagagg |
228 |
Q |
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||||||||| ||| |||| |||| ||||||||||||||||||||||| ||||| ||||| | |||||| |
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| T |
52340539 |
attccctccgaccatgaaggcaccgggatccaccaacaacttcttccttggcggcgcaggggtgagagg |
52340471 |
T |
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