View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_82 (Length: 251)
Name: NF0947_low_82
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 39185000 - 39185182
Alignment:
| Q |
9 |
caacaatatcaccaaaaccagtaccaaacctgaaagcatgtgagacacccagagnnnnnnngtcgatatatacccaaaaccgccaaaa---aaccaagca |
105 |
Q |
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| T |
39185000 |
caacaaaatcaccaaaaccagtaccgaacgtgaaagcacgtgagacacccagagaaaaaa-gtcgatatatacctaaaaccacaaaaaaaaaaccaagca |
39185098 |
T |
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| Q |
106 |
accagcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39185099 |
accagcaccactacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaacagtaacacaaaaacttaaacaaccc |
39185182 |
T |
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