View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_87 (Length: 250)
Name: NF0947_low_87
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_87 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 40068116 - 40068359
Alignment:
| Q |
7 |
tccaacaatatgaacatacaaaaacttttccttaaagtatgccgaacaaaagttagcctgaagtctagttctgcacatttgaccaaatggccaacattag |
106 |
Q |
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| T |
40068116 |
tccaacaataagaacatacaaaaacttttccttaaagtatgccgaacaaaagttagcctgaagtctagttctgcacatttgaccaaatggccaacattag |
40068215 |
T |
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| Q |
107 |
tgcttagaccaacaacgtggcatacattttcatgtgtgtgacaatacatttgttcctatacacttccaactttcacactattctatcttctatcattcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40068216 |
tgcttagaccaacaacgtggcatacattttcatgtgtgtgacaatacatttgttcctatacacttccaactttcacactattctatcttctatcattcca |
40068315 |
T |
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| Q |
207 |
aattgcagaggtcattggtgctaaattaacacattcctcaaaga |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40068316 |
aattgcagaggtcattggtgctaaattaacacattcctcaaaga |
40068359 |
T |
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