View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_low_89 (Length: 246)
Name: NF0947_low_89
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 43 - 242
Target Start/End: Complemental strand, 37255829 - 37255613
Alignment:
| Q |
43 |
aacataatttcacaaatatattttttcaattaaattagttgaatattaacnnnnnnnntaatttaaattagttgacaataagctctgtcttgtctccaaa |
142 |
Q |
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| T |
37255829 |
aacataatttcgcaaatatattttttcaattaaattagttgaatatttgcaaaaaaa-taatttaaattagttgacaataaactttgtcttgtctccaaa |
37255731 |
T |
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| Q |
143 |
attattgtcaagtaattcataa-----------------cacactaattaaaaaatatactatgtgatggattcagatgacatgtttgatatgtgtatac |
225 |
Q |
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| T |
37255730 |
attattgtcaagtaattcataaaggtaaccaaaaaaaaacacactaattaaaaaatatactatgtgatggattgagatgacatgtttgatatgtgtatac |
37255631 |
T |
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| Q |
226 |
atgc-tccctgcctatga |
242 |
Q |
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|||| |||||||||||| |
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| T |
37255630 |
atgcacccctgcctatga |
37255613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 37255877 - 37255840
Alignment:
| Q |
22 |
aaaattcatgacacataaattaacataatttcacaaat |
59 |
Q |
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| T |
37255877 |
aaaaatcatgacacataaattaacataatttcacaaat |
37255840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 20117729 - 20117523
Alignment:
| Q |
28 |
catgacacataaattaacataatttcacaaatatattttttcaattaaattagttgaatattaacnnnnnnnntaatttaaattagttgacaataagctc |
127 |
Q |
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| T |
20117729 |
catgacacataagttaacttaatttcacaaatatgatttttaaattaaattagttgaatactagcaaaaaaaatgatttaaattagttgacaataaactt |
20117630 |
T |
|
| Q |
128 |
tgtcttgtctccaaaattattgt----------caagtaattcataacacactaattaaaaaatatactatgtgatggattcagatgacatgtttgatat |
217 |
Q |
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| T |
20117629 |
tgtctcgtctctaaaattattgtaaattattgtcaaataattcataacacactaattaaaaaatatgatatgggatggattcaggtgatatgtttgatat |
20117530 |
T |
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| Q |
218 |
gtgtata |
224 |
Q |
| |
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|||||| |
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| T |
20117529 |
atgtata |
20117523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 31488792 - 31488639
Alignment:
| Q |
28 |
catgacacataaattaacataatttcacaaatatattttttcaattaaattagttgaatattaacnnnnnnnntaatttaaattagttgacaataagctc |
127 |
Q |
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|||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||| | | ||||||||||||||||||||| || |
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| T |
31488792 |
catgacacataagttaacttaatttcacaaatatgatttttaaattaaattagttgaatacca--gaaaaaaatgatttaaattagttgacaataaactt |
31488695 |
T |
|
| Q |
128 |
tgtcttgtctccaaaattattgtcaagtaattcataacacactaattaaaaaatat |
183 |
Q |
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||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31488694 |
tgtatcgtctctaaaattattgtcaaataattcataacacactaattaaaaaatat |
31488639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 31483526 - 31483487
Alignment:
| Q |
185 |
ctatgtgatggattcagatgacatgtttgatatgtgtata |
224 |
Q |
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||||| ||||||||||| |||||||||||||||||||||| |
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| T |
31483526 |
ctatgggatggattcaggtgacatgtttgatatgtgtata |
31483487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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