View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0947_low_91 (Length: 244)
Name: NF0947_low_91
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_91 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 43259109 - 43259214
Alignment:
| Q |
1 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattatctacccatggagccaggattgtaccaatcttggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
43259109 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggagccaggattgtaccaatcttggaa |
43259208 |
T |
|
| Q |
101 |
tcttct |
106 |
Q |
| |
|
|||||| |
|
|
| T |
43259209 |
tcttct |
43259214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 43255843 - 43255948
Alignment:
| Q |
1 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattatctacccatggagccaggattgtaccaatcttggaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||| |
|
|
| T |
43255843 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggag |
43255942 |
T |
|
| Q |
101 |
tcttct |
106 |
Q |
| |
|
|||||| |
|
|
| T |
43255943 |
tcttct |
43255948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43247846 - 43247908
Alignment:
| Q |
1 |
gtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtatt |
63 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
43247846 |
gtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtatt |
43247908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University