View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0947_low_92 (Length: 228)
Name: NF0947_low_92
Description: NF0947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0947_low_92 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34888725 - 34888947
Alignment:
| Q |
1 |
cggctcatggattgttggagttagtggacacattgattgtgctgacagcgtagaagctgaattaaaaggcatagagattggactaatgttcgcttgggaa |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34888725 |
cggctcatggattgttggagttagtggatacattgattgtgctgacagcctagaagctgaattaaaaggcatagagattggactaatgttcgcttgggaa |
34888824 |
T |
|
| Q |
101 |
cttggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataaatatgttgagataacgg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
34888825 |
cttggctatcgagacgtgagttgcagaattgattgttgacacgctacacgtttgattcaagactcaacatctcaatctcataaatatgttgagataaaag |
34888924 |
T |
|
| Q |
201 |
ataatatcaaggaggatatgtct |
223 |
Q |
| |
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||| ||||||||||| ||||||| |
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| T |
34888925 |
atagtatcaaggaggttatgtct |
34888947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 34034573 - 34034786
Alignment:
| Q |
1 |
cggctcatggattgttggagttagtggacacattgattgtgctgacagcgtagaagctgaattaaaaggcatagagattggactaatgttcgcttgggaa |
100 |
Q |
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||||||||||||| | ||| |||||||| |||||| | || |||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||| |
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| T |
34034573 |
cggctcatggattttaggatttagtggatacattggtattgttgacagcgtacaagctgaattaaaaggcatagagagtggactaaggttggcttgggat |
34034672 |
T |
|
| Q |
101 |
cttggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataaatatgttgagataacgg |
200 |
Q |
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||||||||||||||||||||| |||| |||||||||| | |||| | |||| ||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
34034673 |
tgtggctatcgagacgtgagttgtagaagtgattgttggaaagctatattattgagtcaagactcaacatctcagcctcataaatatgttgagattacgg |
34034772 |
T |
|
| Q |
201 |
ataatatcaaggag |
214 |
Q |
| |
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| | |||||||||| |
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| T |
34034773 |
agagtatcaaggag |
34034786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 45632581 - 45632775
Alignment:
| Q |
1 |
cggctcatggattgttggagttagtggacacattgattgtgctgacagcgtagaagctgaattaaaagg-catagagattggactaatgttcgcttggga |
99 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||| ||| ||||||||| ||||| |||| ||| ||| |||| ||||| ||||||| |||||||| |
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| T |
45632581 |
cggctcatggatcgtaggatttagtggacacattaattttgctgacagtttagaatttgaactaatagggcataatatttggattaatgttagcttggga |
45632680 |
T |
|
| Q |
100 |
acttggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataaatatgttgaga |
194 |
Q |
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| | ||||| | ||||||||||||||||| ||||||| | | |||| | ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
45632681 |
aatcggctaccaagacgtgagttgcagaagtgattgtatggaggctatatctttgattcaagactcaacatctcagcctaataaatatgttgaga |
45632775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 2658672 - 2658478
Alignment:
| Q |
1 |
cggctcatggattgttggagttagtggacacattgattgtgctgacagcgtagaagctgaattaaaagg-catagagattggactaatgttcgcttggga |
99 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||| ||| ||||||||| ||||| |||| ||| ||| |||| ||||| ||||||| |||||||| |
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| T |
2658672 |
cggctcatggatcgtaggatttagtggacacattaattttgctgacagtttagaatttgaactaatagggcataatatttggattaatgttagcttggga |
2658573 |
T |
|
| Q |
100 |
acttggctatcgagacgtgagttgcagaactgattgttggcacgctacacgtttgattcaagactcaacatctcagtctcataaatatgttgaga |
194 |
Q |
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| | ||||| | ||||||||||||||||| ||||||| | | |||| | ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
2658572 |
aatcggctaccaagacgtgagttgcagaagtgattgtatggaggctatatctttgattcaagactcaacatctcagcctaataaatatgttgaga |
2658478 |
T |
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