View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0948_high_11 (Length: 457)

Name: NF0948_high_11
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0948_high_11
NF0948_high_11
[»] chr7 (13 HSPs)
chr7 (19-415)||(48152566-48152948)
chr7 (292-389)||(25311291-25311388)
chr7 (292-415)||(45648428-45648540)
chr7 (297-366)||(5474841-5474910)
chr7 (292-413)||(9229551-9229672)
chr7 (292-368)||(42040709-42040785)
chr7 (292-407)||(47843979-47844083)
chr7 (353-413)||(43495959-43496019)
chr7 (339-413)||(24699685-24699759)
chr7 (376-414)||(40836269-40836307)
chr7 (305-339)||(3751765-3751799)
chr7 (292-338)||(45491964-45492010)
chr7 (357-413)||(48138359-48138415)
[»] chr2 (14 HSPs)
chr2 (304-415)||(38221818-38221929)
chr2 (305-415)||(40498389-40498499)
chr2 (290-415)||(42794946-42795071)
chr2 (290-412)||(40363607-40363729)
chr2 (292-413)||(14749364-14749485)
chr2 (312-413)||(36467024-36467125)
chr2 (335-415)||(30382995-30383075)
chr2 (292-413)||(26352388-26352509)
chr2 (340-414)||(7017676-7017749)
chr2 (293-367)||(35298242-35298316)
chr2 (292-341)||(17328513-17328562)
chr2 (291-338)||(41323707-41323754)
chr2 (302-367)||(21812171-21812236)
chr2 (353-413)||(18858323-18858383)
[»] scaffold0565 (1 HSPs)
scaffold0565 (298-415)||(7704-7821)
[»] chr6 (11 HSPs)
chr6 (290-415)||(2032561-2032686)
chr6 (294-414)||(12283899-12284019)
chr6 (294-414)||(12312228-12312348)
chr6 (292-415)||(2988332-2988455)
chr6 (292-413)||(17533597-17533718)
chr6 (353-413)||(10229301-10229361)
chr6 (292-413)||(1928978-1929099)
chr6 (294-414)||(8485741-8485860)
chr6 (340-415)||(688284-688359)
chr6 (303-339)||(32340543-32340579)
chr6 (292-372)||(33927647-33927727)
[»] chr1 (17 HSPs)
chr1 (304-412)||(11767853-11767961)
chr1 (292-415)||(40693725-40693848)
chr1 (293-415)||(17116044-17116166)
chr1 (293-413)||(46594437-46594557)
chr1 (292-415)||(38683126-38683248)
chr1 (292-415)||(50726458-50726581)
chr1 (292-338)||(14286825-14286871)
chr1 (293-359)||(22791341-22791407)
chr1 (294-339)||(13558302-13558347)
chr1 (305-414)||(4973287-4973398)
chr1 (371-415)||(13558358-13558402)
chr1 (292-339)||(50709364-50709410)
chr1 (292-338)||(10443353-10443398)
chr1 (292-338)||(25294812-25294858)
chr1 (353-413)||(14286875-14286935)
chr1 (292-344)||(16122583-16122635)
chr1 (353-413)||(17936407-17936467)
[»] chr8 (9 HSPs)
chr8 (292-415)||(9409727-9409850)
chr8 (293-415)||(11789578-11789700)
chr8 (292-374)||(24728775-24728857)
chr8 (292-415)||(11755872-11755995)
chr8 (353-415)||(25429878-25429940)
chr8 (369-409)||(23877604-23877644)
chr8 (340-415)||(24888973-24889048)
chr8 (353-415)||(17749103-17749165)
chr8 (292-338)||(24889039-24889085)
[»] chr4 (11 HSPs)
chr4 (292-415)||(2295170-2295293)
chr4 (292-413)||(34075365-34075486)
chr4 (292-413)||(38948668-38948789)
chr4 (294-415)||(53586208-53586329)
chr4 (292-367)||(6255203-6255278)
chr4 (340-413)||(1052213-1052286)
chr4 (301-414)||(6007997-6008110)
chr4 (292-349)||(40216791-40216848)
chr4 (295-338)||(47923217-47923260)
chr4 (292-358)||(53018816-53018882)
chr4 (290-338)||(24913650-24913698)
[»] chr3 (17 HSPs)
chr3 (303-414)||(45472419-45472529)
chr3 (330-413)||(24120896-24120979)
chr3 (292-413)||(12176692-12176813)
chr3 (292-352)||(7629445-7629506)
chr3 (293-369)||(32834792-32834868)
chr3 (292-338)||(17064097-17064143)
chr3 (292-413)||(36172144-36172264)
chr3 (289-338)||(43471580-43471629)
chr3 (340-415)||(52695768-52695843)
chr3 (292-338)||(46979623-46979669)
chr3 (379-415)||(36504715-36504751)
chr3 (292-415)||(27164231-27164354)
chr3 (380-415)||(29323956-29323991)
chr3 (304-338)||(20369506-20369540)
chr3 (292-366)||(35433299-35433373)
chr3 (292-413)||(16342962-16343083)
chr3 (292-369)||(40614630-40614706)
[»] chr5 (11 HSPs)
chr5 (290-415)||(7056897-7057021)
chr5 (290-415)||(29231282-29231407)
chr5 (303-415)||(26564765-26564873)
chr5 (292-390)||(8229126-8229224)
chr5 (353-414)||(34764795-34764856)
chr5 (292-382)||(2628204-2628294)
chr5 (291-413)||(27925139-27925261)
chr5 (289-338)||(19100303-19100352)
chr5 (292-338)||(31114267-31114313)
chr5 (293-340)||(31211082-31211129)
chr5 (353-415)||(19100237-19100299)
[»] scaffold0051 (1 HSPs)
scaffold0051 (292-403)||(53605-53716)
[»] scaffold0015 (1 HSPs)
scaffold0015 (380-415)||(38483-38518)
[»] scaffold0495 (1 HSPs)
scaffold0495 (353-406)||(6019-6072)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 48152566 - 48152948
Alignment:
Q  19 aaaggataaatgcagtggtttggatgtctttcgttcaaaggttcttggttttaatttgtcaataacttaatggaaaatcaatcatttctaagcctgagat 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48152566 aaaggataaatgcagtggtttggatgtctt-cgttcaaaggttcttggttttaatttgtcaataacttaatggaaaatcaatcatttctaagcctgagat 48152664  T
Q  119 ttggattgtacannnnnnncacagcattacaatatgaagatttgtggagctcgttactgcagcatgtgaataccttctttttgattccttcataaattga 218  Q
    ||||||||||||       |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48152665 ttggattgtacatttttttcacagcattacaatatgaagatttgtagagctcgttactggagcatgtgaataccttctttttgattccttcataaattga 48152764  T
Q  219 aacccatgaggcagctggtattatcaaagtgtcacgatgttattgtttaggagttttgttatcaccttgtgagctatgaagcccggatactccaaaacgg 318  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||             |||||||||||||||||||||||    
T  48152765 aacccatgaggcagctggtattatcaaagtgtcaccatgttattgtttaggagttttgttatca-------------gaagcccggatactccaaaacgg 48152851  T
Q  319 agacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||    
T  48152852 agacgtatctgtatcggatacgtattggatactgatactccacggatactcgcggacacgcacccacgaagtatcagaattaattatttaaattttt 48152948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 25311388 - 25311291
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaag 389  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||  |||| |||||| |||||||||  |||||| |||| ||| | ||||||||    
T  25311388 ctatgaagcctggatactccaaaacggagacgtacccgtatcggatacatattagatactgatactccacaaatactcgcggatacgtatccacgaag 25311291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 45648540 - 45648428
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||           || | ||||||||||||||| |||| ||| ||||||||||||    
T  45648540 ctatgaagcccgaatactccaaaatggagacgtacccgtatcggata-----------ctgaaactccacggatactcgcggatacgtacccacgaagta 45648452  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    ||| |||||||||||| |||||||    
T  45648451 tcggaattaattattttaattttt 45648428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 366
Target Start/End: Complemental strand, 5474910 - 5474841
Alignment:
Q  297 aagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggata 366  Q
    |||| |||||| ||||||||||||||||| || ||||||||||||||||||||   ||||||||||||||    
T  5474910 aagctcggatattccaaaacggagacgtacccatatcggatatgtattggatatcgatactccacggata 5474841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 9229672 - 9229551
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||| |||||| |||||| ||||||||| |||||  ||||| |||||||||    ||||||| | ||||||| |||| ||| ||||||| ||||    
T  9229672 ctatgaagcctggataccccaaaatggagacgtacccgtactggatacgtattggatttcgatactccgcagatactctcggatacgtacccacggagta 9229573  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||  |||||||||||| |||||    
T  9229572 tcagaattaattattttaattt 9229551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 368
Target Start/End: Complemental strand, 42040785 - 42040709
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatact 368  Q
    ||||||||| ||||||||||||||||||||||||  |||| |||||| ||||  |||||  ||||||||||||||||    
T  42040785 ctatgaagctcggatactccaaaacggagacgtactcgtaccggatacgtatcagataccgatactccacggatact 42040709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 407
Target Start/End: Complemental strand, 47844083 - 47843979
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||||           |  ||||||||||||||||| |||| ||| ||||||||||||    
T  47844083 ctatgaagcccggatactacaaaacagagacgtacccgtatcggata-----------ccgatactccacggatactcgcggatacgtacccacgaagta 47843995  T
Q  392 tcgaaattaattattt 407  Q
    ||  ||||||||||||    
T  47843994 tctcaattaattattt 47843979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 43496019 - 43495959
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    |||||| |||||||||| |||| ||||||| ||||||||||  ||||||||||||||||||    
T  43496019 atactctacggatactcgcggatacgcacctacgaagtatccgaattaattatttaaattt 43495959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 24699685 - 24699759
Alignment:
Q  339 tgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    ||||| ||||||| ||||||| ||||||||| |||| ||| | ||||| ||||||| |||||||||||| |||||    
T  24699685 tgtatcggatactgatactccgcggatactctcggatacgtatccacggagtatcggaattaattattttaattt 24699759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 40836269 - 40836307
Alignment:
Q  376 acgcacccacgaagtatcgaaattaattatttaaatttt 414  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  40836269 acgcacccacgaagtatcggaattaattatttaaatttt 40836307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 3751799 - 3751765
Alignment:
Q  305 atactccaaaacggagacgtatccgtatcggatat 339  Q
    ||||||||||||||||||||| |||||||||||||    
T  3751799 atactccaaaacggagacgtacccgtatcggatat 3751765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 45491964 - 45492010
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||| || ||||||| ||||||||||||||| ||||||||||||    
T  45491964 ctatgaaaccaggatacttcaaaacggagacgtacccgtatcggata 45492010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Original strand, 48138359 - 48138415
Alignment:
Q  357 tccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    ||||||||||||| |||| ||| ||| ||||| ||||| |||||||||||| |||||    
T  48138359 tccacggatactctcggatacgtacctacgaaatatcggaattaattattttaattt 48138415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 38221929 - 38221818
Alignment:
Q  304 gatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaatt 403  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  38221929 gatactccaaaacggagacgtacccgtatcggatacgtattggataccgatactccacggatactcgcggatacgcacccacgaagtatcggaattaatt 38221830  T
Q  404 atttaaattttt 415  Q
    ||||||||||||    
T  38221829 atttaaattttt 38221818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 305 - 415
Target Start/End: Original strand, 40498389 - 40498499
Alignment:
Q  305 atactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaatta 404  Q
    ||||| |||||||||||| ||||||||| ||||| | || ||||||  ||||||||| |||||||  ||| ||||||||||||||||||||| |||||||    
T  40498389 atactacaaaacggagacatatccgtattggatacgaatcggataccgatactccacagatactcgtggatacgcacccacgaagtatcgaacttaatta 40498488  T
Q  405 tttaaattttt 415  Q
    |||||||||||    
T  40498489 tttaaattttt 40498499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 42795071 - 42794946
Alignment:
Q  290 agctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaag 389  Q
    |||||||||||||| ||||||||||||||||||||| || ||  ||||| |||| | ||||  ||||||||||||||||| |||| ||| | ||| ||||    
T  42795071 agctatgaagcccgaatactccaaaacggagacgtacccatactggatacgtatggaataccgatactccacggatactcgcggatacgtatccatgaag 42794972  T
Q  390 tatcgaaattaattatttaaattttt 415  Q
    ||||  |||| ||||||| |||||||    
T  42794971 tatcagaattgattattttaattttt 42794946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 412
Target Start/End: Original strand, 40363607 - 40363729
Alignment:
Q  290 agctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaag 389  Q
    ||||||||||  | |||||| ||||||||||||||||| |||| ||||| |||||||||||  ||| || | ||||||||  ||| | |||  |||||||    
T  40363607 agctatgaagttcagatacttcaaaacggagacgtatctgtatgggatacgtattggataccgatattcaatggatactcgtggatatgcattcacgaag 40363706  T
Q  390 tatcgaaattaattatttaaatt 412  Q
    ||||| |||||||||||||||||    
T  40363707 tatcgtaattaattatttaaatt 40363729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 413
Target Start/End: Original strand, 14749364 - 14749485
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||||||||||| |||||| ||||||||| | |||  ||||| |||| |||| |  ||||||| ||||||||| |||| ||| ||||||| ||||    
T  14749364 ctatgaagcccggataccccaaaatggagacgtacctgtactggatacgtatcggattccgatactccgcggatactctcggatacgtacccacggagta 14749463  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||  |||||||||||| |||||    
T  14749464 tcagaattaattattttaattt 14749485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 36467024 - 36467125
Alignment:
Q  312 aaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaat 411  Q
    |||||||||||||| || |||||||||||||| ||||||  ||||||||| ||||||   | | ||| || |||||||||||| |||||||||||| |||    
T  36467024 aaaacggagacgtacccatatcggatatgtatcggataccgatactccacagatacttgtgaatacgtactcacgaagtatcggaattaattattttaat 36467123  T
Q  412 tt 413  Q
    ||    
T  36467124 tt 36467125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 30383075 - 30382995
Alignment:
Q  335 gatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    |||| |||||||||||  |||||||||| |||||| |||| ||| ||||||||||||||| | |||||||||| |||||||    
T  30383075 gatacgtattggatacagatactccacgaatactcgcggatacgtacccacgaagtatcggagttaattattttaattttt 30382995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 413
Target Start/End: Original strand, 26352388 - 26352509
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||| || ||| ||||||||||| ||||| ||| ||||||| |||| ||||  |||||  ||||| ||| ||||||| |||| ||| ||||||  ||||    
T  26352388 ctatgcagtccgaatactccaaaatggagatgtacccgtatcagatacgtatcagataccgatacttcacagatactcgcggatacgtacccactgagta 26352487  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||| |||||||||||| |||||    
T  26352488 tcggaattaattattttaattt 26352509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 7017676 - 7017749
Alignment:
Q  340 gtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaatttt 414  Q
    |||| ||||||| | ||| ||||||||||| |||| ||| ||||||||| ||||| |||||||||||||||||||    
T  7017676 gtatcggatactgacacttcacggatactcgcggatacgtacccacgaa-tatcggaattaattatttaaatttt 7017749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 367
Target Start/End: Original strand, 35298242 - 35298316
Alignment:
Q  293 tatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatac 367  Q
    ||||||| ||||||||||||||||  ||||||| | |||||||||| |||| ||||||  ||||||||| |||||    
T  35298242 tatgaagtccggatactccaaaacaaagacgtacctgtatcggatacgtatcggataccgatactccacagatac 35298316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 17328513 - 17328562
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgt 341  Q
    ||||||||| | |||||||||||||||||||||| ||| |||||||||||    
T  17328513 ctatgaagcacagatactccaaaacggagacgtacccgcatcggatatgt 17328562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 41323707 - 41323754
Alignment:
Q  291 gctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||| ||||    
T  41323707 gctatgaagcctggatactccaaaacggacacgtacccgtatcagata 41323754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 21812171 - 21812236
Alignment:
Q  302 cggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatac 367  Q
    ||||||||||||||   |||| ||||||||||||||| ||||  |||||  |||||||||||||||    
T  21812171 cggatactccaaaataaagacatatccgtatcggatacgtatcagataccgatactccacggatac 21812236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 18858323 - 18858383
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    ||||||||||||||||| ||| ||  ||| ||| ||||||| ||||||||||||| |||||    
T  18858323 atactccacggatactcgcgggcaaacactcacaaagtatcaaaattaattattttaattt 18858383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 298 - 415
Target Start/End: Original strand, 7704 - 7821
Alignment:
Q  298 agcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaa 397  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||  |||||  |||||| |||||||||| |||| ||| | ||||||||||||| ||    
T  7704 agcccagatacttcaaaacggagacgtatccgtatcggatacgtatcagataccgatactctacggatactcgcggatacgtatccacgaagtatcggaa 7803  T
Q  398 ttaattatttaaattttt 415  Q
    |||||||||| |||||||    
T  7804 ttaattattttaattttt 7821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 2032686 - 2032561
Alignment:
Q  290 agctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaag 389  Q
    |||||||||||||||||||| ||||||||||| |||  |||| || ||| |||| ||||||  ||||||||||||||||| |||| ||| | ||||||||    
T  2032686 agctatgaagcccggatactacaaaacggagatgtactcgtaccgaatacgtatcggataccgatactccacggatactcgcggatacgtatccacgaag 2032587  T
Q  390 tatcgaaattaattatttaaattttt 415  Q
    ||||| |||||||||||| |||||||    
T  2032586 tatcggaattaattattttaattttt 2032561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 12284019 - 12283899
Alignment:
Q  294 atgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatc 393  Q
    ||||||| | |||||||||||| | |||||||||||||||||||| |||| ||||||  |||||||||||||| |  |||| | | ||||||||||||||    
T  12284019 atgaagctcagatactccaaaatgaagacgtatccgtatcggatacgtatcggataccgatactccacggatatttgcggatatgtacccacgaagtatc 12283920  T
Q  394 gaaattaattatttaaatttt 414  Q
     ||||||||||||| ||||||    
T  12283919 aaaattaattattttaatttt 12283899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 12312348 - 12312228
Alignment:
Q  294 atgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatc 393  Q
    ||||||||||||||||  |||| ||||||||||| |||| ||||| |||| ||||||| |||||| |||||||||  |||| ||| ||| | ||||||||    
T  12312348 atgaagcccggatactttaaaatggagacgtatctgtattggatacgtatcggatactgatactctacggatacttgcggatacgtacctatgaagtatc 12312249  T
Q  394 gaaattaattatttaaatttt 414  Q
    | |||||||||||| ||||||    
T  12312248 ggaattaattattttaatttt 12312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 2988455 - 2988332
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||| | ||||||||||||| ||||||||  |||||  |||| ||||  |||||| ||||||||| |||| || |||| |||||| ||| |||||    
T  2988455 ctatgaagctcagatactccaaaacagagacgtactcgtattagatacgtatcagatactgatactccacagatagtcacggatacgcacacacaaagta 2988356  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    ||  ||||||||||||||||||||    
T  2988355 tcagaattaattatttaaattttt 2988332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 17533718 - 17533597
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||||||||||| ||||| ||||||||  ||||| || |||||||| ||||||  ||||||  ||||||||| | || ||| | ||| ||||||    
T  17533718 ctatgaagcccggatacttcaaaatggagacgtgcccgtaacgaatatgtatcggataccgatactctgcggatactctcagatacgtatccatgaagta 17533619  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||| |||||||||||| |||||    
T  17533618 tcggaattaattattttaattt 17533597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 10229301 - 10229361
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    |||||||||| ||| || |||| ||||||||||||||||||  ||||||||||||||||||    
T  10229301 atactccacgtatattcgcggatacgcacccacgaagtatcagaattaattatttaaattt 10229361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 413
Target Start/End: Original strand, 1928978 - 1929099
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||||| |||| |||||  ||||||||| |||||  ||||| ||||  ||| || ||||||| |||||||||  ||| ||| |  |||| ||||    
T  1928978 ctatgaagcccgcataccccaaattggagacgtacccgtactggatacgtatcagattctaatactccgcggatactcttggatacgtatgcacggagta 1929077  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||| |||||||||||| |||||    
T  1929078 tcggaattaattattttaattt 1929099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 8485741 - 8485860
Alignment:
Q  294 atgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatc 393  Q
    ||||||||| |||||| |||| || |||||||||||||| ||||| |||| || ||   ||||| |||||||||||   || ||| ||||||||||||||    
T  8485741 atgaagcccagatactgcaaa-cgaagacgtatccgtattggatacgtatcgggtatcgatacttcacggatactcttagatacgtacccacgaagtatc 8485839  T
Q  394 gaaattaattatttaaatttt 414  Q
      |||||| ||||| ||||||    
T  8485840 tgaattaaatattttaatttt 8485860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 688359 - 688284
Alignment:
Q  340 gtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    |||| ||||||  ||||||||||||||||| |||| ||| | ||||||||||||  ||||| |||||| |||||||    
T  688359 gtatcggataccgatactccacggatactcgcggatacgtatccacgaagtatcagaattatttattttaattttt 688284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 32340579 - 32340543
Alignment:
Q  303 ggatactccaaaacggagacgtatccgtatcggatat 339  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  32340579 ggatactccaaaacggagacgtatctgtattggatat 32340543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 33927647 - 33927727
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccg 372  Q
    |||||||||||||||||||||||| || | | |  |||| ||||||| |||| ||||||  ||||||| | ||||||||||    
T  33927647 ctatgaagcccggatactccaaaatggtgccattcccgtgtcggatacgtatcggataccgatactccgcagatactcccg 33927727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 11767961 - 11767853
Alignment:
Q  304 gatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaatt 403  Q
    ||||||| |||||||||||||| |||||| ||||| |||| ||||||  |||||  |||||||||| |||| |||||||||||||||||| |||||||||    
T  11767961 gatactctaaaacggagacgtacccgtattggatacgtatcggataccgatactttacggatactcgcggatacgcacccacgaagtatcaaaattaatt 11767862  T
Q  404 atttaaatt 412  Q
    |||||||||    
T  11767861 atttaaatt 11767853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 40693725 - 40693848
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||||| ||||||  ||||| |||||||| | ||| |||||| |||| ||||||  ||||||||||||||||| |||| ||| | ||||||||||    
T  40693725 ctatgaagcccagatactttaaaacagagacgtacctgtaccggatacgtatcggataccgatactccacggatactcgcggatacgtatccacgaagta 40693824  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    | | |||||||||||| |||||||    
T  40693825 ttggaattaattattttaattttt 40693848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 415
Target Start/End: Original strand, 17116044 - 17116166
Alignment:
Q  293 tatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtat 392  Q
    ||||||||||  |||||||||||||||||||||  |||| | |||| |||| ||||||  ||||| ||||||||||| |||  ||| | |||||||||||    
T  17116044 tatgaagcccaaatactccaaaacggagacgtacacgtaccagatacgtatcggataccgatacttcacggatactcgcgggtacgtatccacgaagtat 17116143  T
Q  393 cgaaattaattatttaaattttt 415  Q
    || |||||||||||| |||||||    
T  17116144 cggaattaattattttaattttt 17116166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 413
Target Start/End: Complemental strand, 46594557 - 46594437
Alignment:
Q  293 tatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtat 392  Q
    ||||||||||  |||||| |||| ||||||||||||||||| ||||||||| | ||||| ||||||| | ||||||  | || ||| || |||| |||||    
T  46594557 tatgaagccctcatactctaaaatggagacgtatccgtatccgatatgtatcgaatactgatactccgcagatactgtcagatacgtactcacggagtat 46594458  T
Q  393 cgaaattaattatttaaattt 413  Q
     | |||||||||||| |||||    
T  46594457 tggaattaattattttaattt 46594437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 38683248 - 38683126
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||| || | |||||||||||||||||||||   |||||| |||||||| ||| ||  |||||| |||||||||| |  | ||| | ||| ||||||    
T  38683248 ctatgaatcctgaatactccaaaacggagacgtacttgtatcgaatatgtatcggacaccgatactctacggatactcgcaaatacgta-ccatgaagta 38683150  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    |||||||||||||||| |||||||    
T  38683149 tcgaaattaattattttaattttt 38683126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 50726458 - 50726581
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||| ||||||||| ||| || |||||||| |||||||||||| ||||   ||||  ||| |||||||||| ||  | | ||| | ||||||||||    
T  50726458 ctatgaagtccggatacttcaagacagagacgtacccgtatcggatacgtatcatataccgatattccacggatattcgtgaatacgtatccacgaagta 50726557  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    ||| |||||||||||| |||||||    
T  50726558 tcggaattaattattttaattttt 50726581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 14286825 - 14286871
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  14286825 ctatgaaacccggataatccaaaacggagacgtacccgtatcggata 14286871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 22791407 - 22791341
Alignment:
Q  293 tatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactcc 359  Q
    ||||||| ||||||||||||||| ||||||||| |||||||  ||||||||  |||||| |||||||    
T  22791407 tatgaagtccggatactccaaaatggagacgtacccgtatcatatatgtatccgatactgatactcc 22791341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 13558302 - 13558347
Alignment:
Q  294 atgaagcccggatactccaaaacggagacgtatccgtatcggatat 339  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||    
T  13558302 atgaagcctagatactccaaaacggagacgtatctgtatcggatat 13558347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 414
Target Start/End: Complemental strand, 4973398 - 4973287
Alignment:
Q  305 atactccaaaacggagacgtatccgtatcggatatgtattggatac--tcatactccacggatactcccggacacgcacccacgaagtatcgaaattaat 402  Q
    ||||||||||||||||||||| |||||||  ||| |||||||||||    ||| | |||  |||||| |||| ||| ||||||||| |||   |||||||    
T  4973398 atactccaaaacggagacgtacccgtatcaaatacgtattggataccgatatattacactaatactcgcggatacgtacccacgaaatatgagaattaat 4973299  T
Q  403 tatttaaatttt 414  Q
    ||||||||||||    
T  4973298 tatttaaatttt 4973287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 13558358 - 13558402
Alignment:
Q  371 cggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||    
T  13558358 cggatacgcatccacgaagtatcggaattaattatttaaattttt 13558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 50709364 - 50709410
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatat 339  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||    
T  50709364 ctatgaagcc-gtatactccaaaatggagacgtatccgtatcggatat 50709410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 10443353 - 10443398
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    |||||| ||||||||||||||||||||||||||| || |||||||||    
T  10443353 ctatgatgcccggatactccaaaacggagacgta-ccatatcggata 10443398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 25294858 - 25294812
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||| |||||||||||||||||||||||||  | ||||||||||    
T  25294858 ctatgaaacccggatactccaaaacggagacgtccctgtatcggata 25294812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 14286875 - 14286935
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    ||||||||||||||||| |||| ||  || || ||||||||| |||||||||||| |||||    
T  14286875 atactccacggatactcgcggatacatactcatgaagtatcggaattaattattttaattt 14286935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 16122583 - 16122635
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtatt 344  Q
    |||| ||| ||||||||||||||||||| ||||| ||||||| |||| |||||    
T  16122583 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtatt 16122635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 413
Target Start/End: Complemental strand, 17936467 - 17936407
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    ||||||| ||||||||| || | ||| ||||||| ||||||| |||||||||||| |||||    
T  17936467 atactccgcggatactctcgaatacgtacccacggagtatcggaattaattattttaattt 17936407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 9409727 - 9409850
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||||||||| |||||||| |||||||| ||||| || ||| |||| ||||||  ||||||||||||||||| |||| ||| | ||||||||||    
T  9409727 ctatgaagcccggatattccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccacggatactcacggatacgtatccacgaagta 9409826  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    ||  |||||||||||| |||||||    
T  9409827 tcataattaattattttaattttt 9409850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 11789700 - 11789578
Alignment:
Q  293 tatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtat 392  Q
    ||||||||||||||||||||||||||||||||  ||||| | |||| ||||  |||||  ||||||||||||||||| |||| ||| | |||||||||||    
T  11789700 tatgaagcccggatactccaaaacggagacgtgcccgtaccagatacgtatcagataccgatactccacggatactcgcggatacgtatccacgaagtat 11789601  T
Q  393 cgaaattaattatttaaattttt 415  Q
    |  |||||||||||| |||||||    
T  11789600 cagaattaattattttaattttt 11789578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 292 - 374
Target Start/End: Complemental strand, 24728857 - 24728775
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccgga 374  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| ||||  |||||  ||||||||||||||||| ||||    
T  24728857 ctatgaagcccggatactccaaaacggagacgtactcgtatcggatacgtatcagataccaatactccacggatactcgcgga 24728775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 11755995 - 11755872
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||  ||||||||| |||||||||||| ||||||||| |||||| ||||||||||| |||||  ||||||||||  ||| ||| |  |||||||||    
T  11755995 ctatgaaatccggatacttcaaaacggagacatatccgtattggatatatattggatactgatactttacggatactcttggatacgtattcacgaagta 11755896  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    |   |||||| ||||| |||||||    
T  11755895 ttataattaaatattttaattttt 11755872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 25429878 - 25429940
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    ||||||||||||||||| |||| ||| ||||| ||||||||  |||||||||||| |||||||    
T  25429878 atactccacggatactcgcggatacgtacccatgaagtatcagaattaattattttaattttt 25429940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 23877644 - 23877604
Alignment:
Q  369 cccggacacgcacccacgaagtatcgaaattaattatttaa 409  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  23877644 cccggatacgcacgcacgaagtatcgaaattaattatttaa 23877604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 24889048 - 24888973
Alignment:
Q  340 gtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    |||| ||||||  ||| ||||||||||||| |||| ||| ||||| ||||||||  |||||||||||| |||||||    
T  24889048 gtatcggataccaatattccacggatactcgcggatacgtacccatgaagtatcagaattaattattttaattttt 24888973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 17749165 - 17749103
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    ||||||||| |||| |  |||| |||||||||||||||| |  ||||||||||||||||||||    
T  17749165 atactccacagatatttgcggatacgcacccacgaagtaacagaattaattatttaaattttt 17749103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 24889085 - 24889039
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||| || ||||| ||||||||||||||| ||||||||||||    
T  24889085 ctatgaagctcgaatactacaaaacggagacgtacccgtatcggata 24889039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 2295170 - 2295293
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||| ||||||||| ||||| |||||||| ||||| |||||| || | ||||||  |||||||| |||||||| |||| ||| | ||||||||||    
T  2295170 ctatgaagcacggatactcaaaaacagagacgtacccgtaccggatacgtgtcggataccgatactccaaggatactcgcggatacgtatccacgaagta 2295269  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    ||| |||||||||||| |||||||    
T  2295270 tcggaattaattattttaattttt 2295293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 34075486 - 34075365
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||||| ||||||||||| ||||||||| || |||| ||||||||| ||||||  |||||||  |||||||| |||| ||| ||||||  ||||    
T  34075486 ctatgaagcccgaatactccaaaatggagacgtacccatatccgatatgtatcggataccgatactccgtggatactctcggatacgtacccacagagta 34075387  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||| |||||||||||| |||||    
T  34075386 tcggaattaattattttaattt 34075365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 38948789 - 38948668
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||||  ||||||||||||| |||||||||||||||| ||||| |||| ||||||  ||||||||||||||||| |||| ||  | ||||| ||||    
T  38948789 ctatgaagcttggatactccaaaatggagacgtatccgtattggatacgtatcggataccgatactccacggatactctcggatacatatccacggagta 38948690  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||| || ||||||||| |||||    
T  38948689 tcggaactaattattttaattt 38948668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 53586208 - 53586329
Alignment:
Q  294 atgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatc 393  Q
    |||||||||  |||||||||||||| |||||| ||||||| |||| |||| | ||||  |||| |||||||| ||| |||| | |||||||| |||||||    
T  53586208 atgaagcccatatactccaaaacggtgacgtacccgtatcagatacgtatcgaataccgatacgccacggatgctcgcggataggcacccaccaagtatc 53586307  T
Q  394 gaaattaattatttaaattttt 415  Q
      ||||||||||||||||||||    
T  53586308 ataattaattatttaaattttt 53586329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 367
Target Start/End: Original strand, 6255203 - 6255278
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatac 367  Q
    |||||||| |||||||||| |||| ||||||||| |||||||||||||  |||||||||  |||||||||||||||    
T  6255203 ctatgaagtccggatactctaaaatggagacgtacccgtatcggatatacattggataccgatactccacggatac 6255278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 1052213 - 1052286
Alignment:
Q  340 gtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    |||||||||||  |||||| ||||||| || |||| ||||||  ||||||||||| | ||||||||||||||||    
T  1052213 gtattggataccgatactctacggatattcgcggatacgcactaacgaagtatcggagttaattatttaaattt 1052286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 6007997 - 6008110
Alignment:
Q  301 ccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaatta 400  Q
    |||||||||||||||   ||| || | |||||| |||| |||| ||||| | |||||| || ||||||  |||| ||||||| |||||||||  | ||||    
T  6007997 ccggatactccaaaataaagaggtgttcgtatcagatacgtatcggatattgatactctacagatacttgcggatacgcaccgacgaagtattaacatta 6008096  T
Q  401 attatttaaatttt 414  Q
    ||||||||||||||    
T  6008097 attatttaaatttt 6008110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 40216791 - 40216848
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggata 349  Q
    |||||||| |||||||||||||||| || || || ||||||||||||||||| |||||    
T  40216791 ctatgaagtccggatactccaaaacagaaacatacccgtatcggatatgtatcggata 40216848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 47923260 - 47923217
Alignment:
Q  295 tgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||    
T  47923260 tgaagcccgaatactctaaaacggagacgtacccgtatcggata 47923217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 53018882 - 53018816
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactc 358  Q
    ||||||||||||||||||||||||  ||||||||| |||||  |||| |||| ||||| | ||||||    
T  53018882 ctatgaagcccggatactccaaaatagagacgtattcgtataagatacgtatcggatattgatactc 53018816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 24913650 - 24913698
Alignment:
Q  290 agctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||||| ||||||||||||||| |||||||| | ||||| ||||    
T  24913650 agctatgaagctcggatactccaaaacagagacgtaccggtatcagata 24913698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 303 - 414
Target Start/End: Original strand, 45472419 - 45472529
Alignment:
Q  303 ggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaat 402  Q
    ||||||| |||||||||||||||  |||||| |||| |||| ||||||  ||||||||||||||||| | || ||||| ||||||||||| |||||||||    
T  45472419 ggatacttcaaaacggagacgtactcgtatccgatacgtatcggataccgatactccacggatactcgc-gatacgcatccacgaagtattgaaattaat 45472517  T
Q  403 tatttaaatttt 414  Q
    ||||||||||||    
T  45472518 tatttaaatttt 45472529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 413
Target Start/End: Original strand, 24120896 - 24120979
Alignment:
Q  330 tatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattt 413  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||| ||| ||||||  |||||||||||||||||||| |||||    
T  24120896 tatcagatatgtattggatactgatactccacggatactcgcggatacgtacccacagagtatcgaaattaattattttaattt 24120979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 12176813 - 12176692
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||||||||||| |||||| ||||||||| || ||  ||||| ||||  ||| || ||||||| ||||||||| |||| ||| ||||||| ||||    
T  12176813 ctatgaagcccggataccccaaaatggagacgtacccatactggatacgtatcagattctgatactccgcggatactctcggatacgtacccacggagta 12176714  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||| |||||||||||| |||||    
T  12176713 tcggaattaattattttaattt 12176692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 7629506 - 7629445
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgt-atccgtatcggatatgtattggatactc 352  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||    
T  7629506 ctatgaagcccggatactccaaaacggagacgtaacccgtaccggatatgtatcggatactc 7629445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 32834792 - 32834868
Alignment:
Q  293 tatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactc 369  Q
    ||||||||||||||||  |||||||||||||||| |||||| |||| |||| ||||||  |||||||||| ||||||    
T  32834792 tatgaagcccggatacctcaaaacggagacgtatgcgtatcagatacgtatcggataccgatactccacgaatactc 32834868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 17064143 - 17064097
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||    
T  17064143 ctatgaagctcggatactccaaaacggagacgtacccgtatcggata 17064097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 413
Target Start/End: Complemental strand, 36172264 - 36172144
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||||||||||| |||||| ||||||||| | |||   |||| |||| ||||||  |||||||  |||||||| |||| ||| ||||||| ||||    
T  36172264 ctatgaagcccggatac-ccaaaatggagacgtacctgtactagatacgtatcggataccgatactccgtggatactctcggatacgtacccacggagta 36172166  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||  |||||||||||| |||||    
T  36172165 tcagaattaattattttaattt 36172144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 43471580 - 43471629
Alignment:
Q  289 gagctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  43471580 gagctatgaatcccggatactccaaaatggagacatatccgtatcggata 43471629  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 415
Target Start/End: Complemental strand, 52695843 - 52695768
Alignment:
Q  340 gtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    |||| ||||||  |||||||||||||||||  ||| ||| ||||||||||||||  |||||||||||| |||||||    
T  52695843 gtatcggataccgatactccacggatactcttggaaacgtacccacgaagtatcagaattaattattttaattttt 52695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 46979669 - 46979623
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  46979669 ctatgaagctcggatactccaaaatggagacgtacccgtatcggata 46979623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 36504715 - 36504751
Alignment:
Q  379 cacccacgaagtatcgaaattaattatttaaattttt 415  Q
    ||||||||||||||| |||||||||||||||||||||    
T  36504715 cacccacgaagtatcaaaattaattatttaaattttt 36504751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 415
Target Start/End: Complemental strand, 27164354 - 27164231
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    |||||||| | ||||||| |||||  |||||||| ||||||| |||||||||| |||| | | |||  ||||||| ||  ||| ||| ||  || |||||    
T  27164354 ctatgaagtctggatacttcaaaatagagacgtacccgtatcagatatgtatttgatattgacactttacggatattcgtggatacgtacttacaaagta 27164255  T
Q  392 tcgaaattaattatttaaattttt 415  Q
    ||| ||||||||||||| ||||||    
T  27164254 tcggaattaattatttacattttt 27164231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 29323956 - 29323991
Alignment:
Q  380 acccacgaagtatcgaaattaattatttaaattttt 415  Q
    |||||||||||||||||||||||||||| |||||||    
T  29323956 acccacgaagtatcgaaattaattattttaattttt 29323991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 20369540 - 20369506
Alignment:
Q  304 gatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||||||||||||||||||||||| |||||    
T  20369540 gatactccaaaacggagacgtatccgtattggata 20369506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 366
Target Start/End: Original strand, 35433299 - 35433373
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggata 366  Q
    ||||||||||| ||||| |||||| ||||||||| |||||  ||||| |||| |||| |  ||||||||||||||    
T  35433299 ctatgaagcccagataccccaaaatggagacgtacccgtactggatacgtatcggattccgatactccacggata 35433373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 413
Target Start/End: Original strand, 16342962 - 16343083
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||||||||||| |||||  ||||| |||  ||||   |||| |||| |||| || ||||||| ||||||||| |||| ||| ||||||  ||||    
T  16342962 ctatgaagcccggatacaccaaagtggagaagtactcgtactcgatacgtatcggattctgatactccgcggatactctcggatacgtacccacagagta 16343061  T
Q  392 tcgaaattaattatttaaattt 413  Q
    ||  |||||||| ||| |||||    
T  16343062 tcataattaattcttttaattt 16343083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Original strand, 40614630 - 40614706
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactc 369  Q
    ||||||||||||||||||||||||| |||| |||| || || ||||| ||||  |||||  ||||| |||||||||||    
T  40614630 ctatgaagcccggatactccaaaacagagatgtat-cgcattggatacgtatcagataccaatacttcacggatactc 40614706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 290 - 415
Target Start/End: Original strand, 7056897 - 7057021
Alignment:
Q  290 agctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaag 389  Q
    |||||||||| | ||||||||||||||||||||||| | ||||| |||| |||| ||||||  |||||| ||||||||||  | | ||| ||||||||||    
T  7056897 agctatgaagtctggatactccaaaacggagacgtacctgtatcagataagtatcggataccgatactctacggatactcgtgaatacgtacccacgaag 7056996  T
Q  390 tatcgaaattaattatttaaattttt 415  Q
    |||||||||||| ||||| |||||||    
T  7056997 tatcgaaattaa-tattttaattttt 7057021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 290 - 415
Target Start/End: Complemental strand, 29231407 - 29231282
Alignment:
Q  290 agctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaag 389  Q
    |||||||||| ||||||||||||||||||||| ||  ||||| |||||| |||| ||||||  |||||||||||||| || | || ||| | ||| ||||    
T  29231407 agctatgaagtccggatactccaaaacggagatgtgcccgtaccggatacgtatcggataccgatactccacggatattcgcagatacgtatccaagaag 29231308  T
Q  390 tatcgaaattaattatttaaattttt 415  Q
    ||||| |||||||||||| |||||||    
T  29231307 tatcggaattaattattttaattttt 29231282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 415
Target Start/End: Original strand, 26564765 - 26564873
Alignment:
Q  303 ggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagtatcgaaattaat 402  Q
    ||||||||||||||||||||||||| |||||||   | ||| ||||||| ||||||||| |||| |   ||| ||||||||||||||||||| |||||||    
T  26564765 ggatactccaaaacggagacgtatctgtatcgg---tatat-ggatactgatactccacagatatttgtggatacgcacccacgaagtatcggaattaat 26564860  T
Q  403 tatttaaattttt 415  Q
    |||||||||||||    
T  26564861 tatttaaattttt 26564873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 8229126 - 8229224
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagt 390  Q
    |||||||  |||||||| |||||||||||||||| |||||||||||| ||||  |||||  ||||||||||||||||| ||||   |||||||||||||    
T  8229126 ctatgaaatccggataccccaaaacggagacgtacccgtatcggatacgtatcagataccgatactccacggatactcgcggatgggcacccacgaagt 8229224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 34764856 - 34764795
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaatttt 414  Q
    ||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||||||||    
T  34764856 atactccacggatactcgcggatacgcacccacgaagtatcagaattaattatttaaatttt 34764795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 382
Target Start/End: Complemental strand, 2628294 - 2628204
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacc 382  Q
    |||||||| ||||||||||||||||||| |  ||| ||||| |||||| ||||||||||  |||||| ||||||| || |||| |||||||    
T  2628294 ctatgaagtccggatactccaaaacggatatatattcgtattggatatatattggataccgatactctacggatattcgcggatacgcacc 2628204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 413
Target Start/End: Original strand, 27925139 - 27925261
Alignment:
Q  291 gctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagt 390  Q
    |||| ||||||||||||||||||||| ||||||||  ||||||||||| ||||  |||||  || |||||| |||| || |||| | | ||| | |||||    
T  27925139 gctaggaagcccggatactccaaaacagagacgtactcgtatcggatacgtatcagataccgatcctccactgatattcgcggatatgtacctatgaagt 27925238  T
Q  391 atcgaaattaattatttaaattt 413  Q
    |||| | |||||||||| |||||    
T  27925239 atcggagttaattattttaattt 27925261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 19100352 - 19100303
Alignment:
Q  289 gagctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  19100352 gagctatgaagcctggatactccaaaatggagacgtacccgtatcggata 19100303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 31114313 - 31114267
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggata 338  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||||    
T  31114313 ctatgaagcccggatactccaaaactgagacatacccgtatcggata 31114267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 31211129 - 31211082
Alignment:
Q  293 tatgaagcccggatactccaaaacggagacgtatccgtatcggatatg 340  Q
    ||||||| | ||||||||||||| ||||| ||||||||||||||||||    
T  31211129 tatgaagtcgggatactccaaaatggagatgtatccgtatcggatatg 31211082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 19100299 - 19100237
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatttaaattttt 415  Q
    ||||| ||||||||||| |||| | | ||| ||||||||| |||||||||||||| |||||||    
T  19100299 atacttcacggatactcgcggatatgtacctacgaagtattgaaattaattattttaattttt 19100237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 403
Target Start/End: Original strand, 53605 - 53716
Alignment:
Q  292 ctatgaagcccggatactccaaaacggagacgtatccgtatcggatatgtattggatactcatactccacggatactcccggacacgcacccacgaagta 391  Q
    ||||||||||||||||| |||||  |||||||||  ||||  ||||| |||| | || || ||||||| ||||||||| |||| ||| |||||| |||||    
T  53605 ctatgaagcccggataccccaaagtggagacgtactcgtactggatacgtatcgaattctgatactccgcggatactctcggatacgtacccacaaagta 53704  T
Q  392 tcgaaattaatt 403  Q
    ||  ||||||||    
T  53705 tcagaattaatt 53716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 415
Target Start/End: Complemental strand, 38518 - 38483
Alignment:
Q  380 acccacgaagtatcgaaattaattatttaaattttt 415  Q
    |||||||||||||||||||||||||||| |||||||    
T  38518 acccacgaagtatcgaaattaattattttaattttt 38483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 6019 - 6072
Alignment:
Q  353 atactccacggatactcccggacacgcacccacgaagtatcgaaattaattatt 406  Q
    |||||||||| ||| || |||| ||||||||||||||||||  |||||||||||    
T  6019 atactccacgtatattcgcggatacgcacccacgaagtatcagaattaattatt 6072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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