View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0948_high_12 (Length: 442)
Name: NF0948_high_12
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 14758996 - 14759398
Alignment:
| Q |
11 |
cagagacaatggtatgcaagtttcagaacctgaatagtatggtatggaattaatttttacaatgtacaataattaaactttgaagtataatataacatat |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14758996 |
cagagacaatggtaggcaagtttcagaacctgaatagtatggtatggaattaatttttacaatgtacaataattaaactatgaagtataatataacatat |
14759095 |
T |
|
| Q |
111 |
gatcgtatatattattaccttcttgcacctcagtctcttcgttctgtctaaggcgctccacgttctcttcgtgctgtctaaggcgcactacaagggccct |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14759096 |
gatcatatatattattaccttcttgcacctcagtctcttcgttctgtctaaggcgctccacgttctcttcgtgctgtctaaggtgcactacaagggccct |
14759195 |
T |
|
| Q |
211 |
agtaatcttctgaaatttttcatagcttatagtaattttcttcccttgggggtaagatccatcatctgctggactttctgcaaggtaattacactaataa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14759196 |
agtaatcttctgaaatttttcatagcttatagtaattttcttcccttgggggtaagatccatcatctgctggactttctgcaaggtaattacactaataa |
14759295 |
T |
|
| Q |
311 |
ataattagtgtaattatttaacatcagcatcttcattattatcattttgatcgccattacctgtgtcgtcctccgtgtttggttcttgaaactcggacag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
14759296 |
ataattagtgtaattatttaacatcagcatcttcattattatcattttgatcgccattacctgtgtcgtcctccatgtttggttcttgaaactcggaccg |
14759395 |
T |
|
| Q |
411 |
atc |
413 |
Q |
| |
|
||| |
|
|
| T |
14759396 |
atc |
14759398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University