View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0948_high_13 (Length: 423)
Name: NF0948_high_13
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_high_13 |
 | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0888 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0149 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 31161 - 31566
Alignment:
| Q |
1 |
ttgatgtcttatctggagtattgattcttgattttttaccatccaacgaattcaatcgttgataaagatgagctataaaaatttaaaggttttcacatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31161 |
ttgatgtcttatctggagtattgattcttgattttttaccatccaacgaattcaatcgttgataaagatgagctataaaaatttaaaggttttcacatcc |
31260 |
T |
|
| Q |
101 |
cgccatactatgtttgtctttgttacccccataaaatttcttttggttgttccgtggagatgtttttccattcccttttgtttctaggagttaatcactg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31261 |
cgccatactatgtttgtctttgtttcccccataaaatttcttttcgttgttccgtggagatgtttttccattcccttttgtttctaggagttaatcactg |
31360 |
T |
|
| Q |
201 |
tatttatgactaagagaaacctttcctttctcttccctctaatatttttactgcttttgttgctttttggtagagaagttaggttg-nnnnnnngtagtt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31361 |
tatttatgactaagagaaacctttcctttctcttccctcttatatttttactgcttttgttgctttttggtagagaagttaggttgttttttttgtagtt |
31460 |
T |
|
| Q |
300 |
aaactggcccattgataaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaagaacg |
399 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31461 |
aaa----cccattgataaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaa-cacg |
31555 |
T |
|
| Q |
400 |
cgcttagtttc |
410 |
Q |
| |
|
||||||||||| |
|
|
| T |
31556 |
cgcttagtttc |
31566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 14888210 - 14888295
Alignment:
| Q |
311 |
ttgataaagaggatcatacctatgctcgtacattagtaagtattatgtcgattttattaacaataaattgtattgttccacaaaga |
396 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |||||||||||||||||| ||| | || |||| |||||||||| |||| |||| |
|
|
| T |
14888210 |
ttgataaagaggatcttacctaggctcgtacgttagtaagtattatgtcggctttgtcaaaaatatattgtattgtaccacgaaga |
14888295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0888 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0888
Description:
Target: scaffold0888; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 3183 - 3248
Alignment:
| Q |
85 |
aaaggttttcacatcccgccatactatgtttgtctttgttacccccataaaatttcttttggttgttc |
152 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
3183 |
aaaggttttcacatccctccatacgttgtttgtctttgtt--ccccataaactttcttttcgttgttc |
3248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University