View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0948_high_2 (Length: 580)
Name: NF0948_high_2
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 540
Target Start/End: Complemental strand, 32210743 - 32210234
Alignment:
| Q |
17 |
aggaaaaggaactatcttttaccaattcnnnnnnnctttctttctagtcttgccaattccagcaatattgtaggacatgtgcaacacataaaaggacaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32210743 |
aggaaaaggaactatcttttaccaattctattttt-tttctttctagtcttgccaattctagcaatattgtaggacatgtgcaacacataaaaggacaag |
32210645 |
T |
|
| Q |
117 |
ggacatgtataatactaactcgagggatccagcatttttggtcgttttgctttttagccacatgaaagcaattagcttagaatagaactttcattttcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32210644 |
ggacatgtataatactaactcgagggatccagcattttt----------------agccacatgaaagcaattagcttagaatagaactttcattttcaa |
32210561 |
T |
|
| Q |
217 |
tcatcctataatagtacaaaattnnnnnnn-tgttgctgtcattcaaatcaattagttgcttgaacgcaataacatgtcacatggataacacttgtcatg |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32210560 |
tcatcctataatagtacaaaattaaaaaaaatgttgctgtcattcaaatcaattagttgcttgaacgcaataacatgtcacatggataacacttgtcatg |
32210461 |
T |
|
| Q |
316 |
tatgttatggaggttcagaaa-ttaattgatctcatgtggcccatttatcaaaatgtagaattcattgctttcacattttggattttaaatcgataatcc |
414 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32210460 |
tatgttatggaggttcagaaatttaattgatctcatgtggcccatttatcaaaatgtagaattcattgctttcacattttggattttaaatcgataatcc |
32210361 |
T |
|
| Q |
415 |
tccctt---tagtaatatttatgaaatcatatgaaataataaaaatagattttaaattatgtcattttaaagacgccatctccttcattagtcctcaaac |
511 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32210360 |
tccctttagtagtaatatttatgaaatc--atgaaataataaaaatggattttaaattatgtcattttaaagacgccatctccttcattagtcctcacac |
32210263 |
T |
|
| Q |
512 |
caatgttctttatgctcaacttcctccca |
540 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32210262 |
caatgttctttatgctcaacttcctccca |
32210234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University