View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_high_4 (Length: 536)
Name: NF0948_high_4
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Original strand, 18892126 - 18892629
Alignment:
| Q |
11 |
acaatatccttatttctcactttcttatttaaatgcaacttgcccatcgattaaaatttcaatcttttctattgaacttttcgtggtacgtatatgtaga |
110 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18892126 |
acaatatccttatttctcactttcttatttaaatgcagcttgcccatcgattaaaatttcaatcttttctattgaatttttcgtggtacgtatatgtaga |
18892225 |
T |
|
| Q |
111 |
ttactggtgttgggtttttgccatcatgtaatcccttcatgaaaattatactccaactcccactttcaattacacatgtgcgcatatgtaatc------t |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18892226 |
ttactggtgttgggtttttgccatcatgtaatcccttcatgaaaattatattccaactcccactttcaattacacatgtgcgcatatgtaatcccttcat |
18892325 |
T |
|
| Q |
205 |
taggatttttcgatttctttgttttctgtctttaatggaatacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatg |
304 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18892326 |
taggatttttcaatttctttgttttctgtctttaatggaatacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatg |
18892425 |
T |
|
| Q |
305 |
aagaataggttgtacagtagaccatgtgacaaatgagtatggtttcttaataacaattaggaaagaaaatttgatgtgatttggaggatttgaggtggag |
404 |
Q |
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| T |
18892426 |
aagaataggttgtacagtagaccatgtgacaaatgagtatggtttcttaataacaattaggaaagaaaatttgatgtgatttggaggatttgaggtggag |
18892525 |
T |
|
| Q |
405 |
ggctgaagttgacatgaatgaaaagcctattagggactttgtcttgctatttctaaaactactgttttgaagttgggtcttagaattgatgaggaggaga |
504 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18892526 |
ggttgaagttgacatgaatgaaaagcctattagggactttgtcttgctatttctaaaactactgatttgaagttgggtcttagaattgatgaggaggaga |
18892625 |
T |
|
| Q |
505 |
agat |
508 |
Q |
| |
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|||| |
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|
| T |
18892626 |
agat |
18892629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Original strand, 49264030 - 49264528
Alignment:
| Q |
11 |
acaatatccttatttctcactttcttatttaaatgcaacttgcccatcgattaaaatttcaatcttttctattgaacttttcgtggtacgtatatgtaga |
110 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49264030 |
acaatatccttgtttctcattttcttatttaaatgcaactt-cccatcgattaaaatttcaatcttttctattgaatttttcgtggtacgtatatgtaga |
49264128 |
T |
|
| Q |
111 |
ttactggtgttgggtttttgccatcatgtaatcccttcatgaaaattatactccaactcccactttcaattacacatgtgcgcatatgtaatc------t |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
49264129 |
ttactggtgttgggtttttgccatcatgtaatcccttcatgaaaattatactccaactcccactttcaattacagttgtgcgcatatgtaatcccttcat |
49264228 |
T |
|
| Q |
205 |
taggatttttcgatttctttgttttctgtctttaatggaatacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatg |
304 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49264229 |
taggatttttcaatttctttgttttctgtctttaatggaatacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatg |
49264328 |
T |
|
| Q |
305 |
aagaataggttgtacagtagaccatgtgacaaatgagtatggtttcttaataacaattaggaaagaaaatttgatgtga-tttggaggatttgaggtgga |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
49264329 |
aagaataggttgtacagtagaccatgtgacaaatgagtatggtttcttaataacaattaggaaagaaaatttgatgtgatttttgaggatttgaggtgga |
49264428 |
T |
|
| Q |
404 |
gggctgaagttgacatgaatgaaaagcctattagggactttgtcttgctatttctaa---aactactgttttgaagttgggtcttagaattgatgaggag |
500 |
Q |
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| T |
49264429 |
gggctaaagttgacatgaatgaaaagcctattagggactttgtcttgctatttctaaattaactactgttttgaagttgggtcttagaattgatgaggag |
49264528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 35411224 - 35411192
Alignment:
| Q |
11 |
acaatatccttatttctcactttcttatttaaa |
43 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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| T |
35411224 |
acaatatccttatttttcactttcttatttaaa |
35411192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 1103582 - 1103550
Alignment:
| Q |
11 |
acaatatccttatttctcactttcttatttaaa |
43 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
1103582 |
acaatttccttatttctcactttcttatttaaa |
1103550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 28385228 - 28385192
Alignment:
| Q |
7 |
tcgaacaatatccttatttctcactttcttatttaaa |
43 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||| |
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| T |
28385228 |
tcgaataatatccttatttctcacttttttatttaaa |
28385192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 48528512 - 48528480
Alignment:
| Q |
11 |
acaatatccttatttctcactttcttatttaaa |
43 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
48528512 |
acaatttccttatttctcactttcttatttaaa |
48528480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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