View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_high_6 (Length: 517)
Name: NF0948_high_6
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 28 - 504
Target Start/End: Complemental strand, 47515754 - 47515278
Alignment:
| Q |
28 |
catatttgtgcgtgtaatatatattggcgtcctttatttaacatcctctgttaatgggtctgtattctgtgttgtatttgtttgtattaatgttattgca |
127 |
Q |
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| T |
47515754 |
catattcgtgcgtgtaatatatattggcgtcctttatttaaaatcctctgttaatgggtctgtattctgtgttgtatttgtttgtattaatgttattgca |
47515655 |
T |
|
| Q |
128 |
tgtttttctcatagcatctcaattctgatattataggatgggctgagaattacatacttctggattaaagagcagcttgagaaagagaaggctggaggtg |
227 |
Q |
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| T |
47515654 |
tgtttttctcatagcatctcaattctgatattataggatgggctgagaattacatacttctggattaaagagcagcttgagaaagagaaggctggaggtg |
47515555 |
T |
|
| Q |
228 |
tagatgtaacatcctatggatcgtctaaagtggtatcgactcaagcccctgttcaactaggttcacttcgggccgcagatggcaatgaatgaggaactaa |
327 |
Q |
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| T |
47515554 |
ttgatgtaacatcctatggatcgtctaaagtggtatcgactcaagcccctgttcaactaggttcacttcgggctgcagatggcaatgaatgaggaactaa |
47515455 |
T |
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| Q |
328 |
agcatagctgttagtgttctcttaaatgtttcaagtgaatggttaggttttatattgctatttcgaagagaactttggttatagttaataagttatctta |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47515454 |
agcatagctgttagtgttctcttaaatgtttcaagtgaatggttaggttttatattgctattttgaagagaactttggttatagttaataagttatctta |
47515355 |
T |
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| Q |
428 |
aggttaattttggaagatgtaatgcgcttattttgttttatgtagcctgtctgaggcagtacttggtgcttatgttc |
504 |
Q |
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| T |
47515354 |
aggttaattttggaagatgtaatgcgcttattttgttttatgtagcctgtctgaggcagtacttggtgcttatgttc |
47515278 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 36023403 - 36023480
Alignment:
| Q |
143 |
atctcaattctgatattataggatgggctgagaattacatacttctggattaaagagcagcttgagaaagagaaggct |
220 |
Q |
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|||| ||||||| |||| |||||||||||||| |||||||| |||||||||| || || ||||| || ||||||||| |
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| T |
36023403 |
atctaaattctggtattgtaggatgggctgaggattacatatgtctggattaaggaacaacttgaaaaggagaaggct |
36023480 |
T |
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