View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_low_1 (Length: 631)
Name: NF0948_low_1
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 114 - 631
Target Start/End: Original strand, 3809689 - 3810206
Alignment:
| Q |
114 |
aaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattcaagt |
213 |
Q |
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| T |
3809689 |
aaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgccattcaagt |
3809788 |
T |
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| Q |
214 |
acacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagttta |
313 |
Q |
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| T |
3809789 |
acacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatccgaagttta |
3809888 |
T |
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| Q |
314 |
cttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgcattcggaagaggaggagccacaccg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3809889 |
cttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgaattcggaagaggaggagccacaccg |
3809988 |
T |
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| Q |
414 |
agcatgtcaaagcaaaatttttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaag |
513 |
Q |
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| T |
3809989 |
aacatgtcaaagcaaaaattttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcagggaag |
3810088 |
T |
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| Q |
514 |
attggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataactcctgtgacaa |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3810089 |
attggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgacaa |
3810188 |
T |
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| Q |
614 |
gagaggtgaataaaactt |
631 |
Q |
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| T |
3810189 |
gagaggtgaataaaactt |
3810206 |
T |
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