View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_low_10 (Length: 501)
Name: NF0948_low_10
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_10 |
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| [»] scaffold0955 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 24881914 - 24882370
Alignment:
| Q |
16 |
ataattgctctaagaagttcaagaatatgagtatctggacttcttattcactggttttccatgttatcatatgtacatagtgtaatataggcatgcagcc |
115 |
Q |
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| T |
24881914 |
ataattgctctaagaagttcaagaatatgagtatctggacttcttattcactggttttccatgttatcatatgtacatagtgtaatataggcatgcagcc |
24882013 |
T |
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| Q |
116 |
ctcaagttcaacctggtgagaaatgcaatataggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaggggttgt |
215 |
Q |
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| T |
24882014 |
ctcaagttcaacctggtgagaaatgcaatataggcatggaggattgttgagcccaaagtggagtcagttgacttgactgtggtaaagcatcaggggttgt |
24882113 |
T |
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| Q |
216 |
tgagcctatggtagcaggttgatgcatcatggccatatgtatggaacacttgacactccaatgtactacgaccacctcctccaccattacggccaccacg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24882114 |
tgagcctatggtagcaggttgatgcatcatggccatatgtatggaacacttgacactccaaggtactacgaccacctcctccaccattacggccaccacg |
24882213 |
T |
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| Q |
316 |
accatggttgccagagccttgggagtaactgagatcagtgacgtcatctgagggttgaaaagaattgtccggagacaaatttgtgagtggaactaaattc |
415 |
Q |
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| T |
24882214 |
accatgtttgccagagccttgggagtaactgagatcagtgacgtcatctgagggttgaaaagaattgtccggagacaaatttgtgagtggaactaaattc |
24882313 |
T |
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| Q |
416 |
ggactactggacgccactgacgaagcaatgataattaaaggaattgatttcttacaa |
472 |
Q |
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| T |
24882314 |
ggactactggacgccactgacgaagcaatgataattgaaggaattcatttcttacaa |
24882370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 227 - 470
Target Start/End: Complemental strand, 25303464 - 25303222
Alignment:
| Q |
227 |
tagcaggttgatgcatcatggccatatgtatggaacacttgacactccaatgtactacgaccacctcctccaccattacggccaccacgaccatggttgc |
326 |
Q |
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| T |
25303464 |
tagcaggttgatgcatcatggccatacgtatggcacacttgaca-tccaaggtactacaaccacctcctcgaccattacggccaccacgaccatggttgc |
25303366 |
T |
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| Q |
327 |
cagagccttgggagtaactgagatcagtgacgtcatctgagggttgaaaagaattgtccggagacaaatttgtgagtggaactaaattcggactactgga |
426 |
Q |
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| T |
25303365 |
cagacccttgggagtaattgagatcagttacgtcatctgaggcttgagaagaattgtctggaaacaaatttgtgagtggaacagaaatcggactactgga |
25303266 |
T |
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| Q |
427 |
cgccactgacgaagcaatgataattaaaggaattgatttcttac |
470 |
Q |
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| T |
25303265 |
cgccactgacaaagcaacaataattgaaggagttgatttcttac |
25303222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 25303585 - 25303511
Alignment:
| Q |
141 |
caatataggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaggggttgt |
215 |
Q |
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| T |
25303585 |
caataaaggcatgtaggattgttgagcccaaagtggagtcagttgacacgattgtggtaaagcatcagggtttgt |
25303511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 25303638 - 25303605
Alignment:
| Q |
110 |
gcagccctcaagttcaacctggtgagaaatgcaa |
143 |
Q |
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| T |
25303638 |
gcagccctcaagttcaccctggtgagaaatgcaa |
25303605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: scaffold0955
Description:
Target: scaffold0955; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 226 - 470
Target Start/End: Complemental strand, 1684 - 1441
Alignment:
| Q |
226 |
gtagcaggttgatgcatcatggccatatgtatggaacacttgacactccaatgtactacgaccacctcctccaccattacggccaccacgaccatggttg |
325 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
1684 |
gtagcaggttgatgcatcatggtcatacgtatgacacacttgaca-tccaaggtactacgaccacctcctcgaccattacggacaccacgaccatggttg |
1586 |
T |
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| Q |
326 |
ccagagccttgggagtaactgagatcagtgacgtcatctgagggttgaaaagaattgtccggagacaaatttgtgagtggaactaaattcggactactgg |
425 |
Q |
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| T |
1585 |
ccagacccttgggagtaattgagatcagtgacgtcatctgaggcttgtgaagaattttctggagacaaatttgtgagtggaacagaattcggactacttg |
1486 |
T |
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| Q |
426 |
acgccactgacgaagcaatgataattaaaggaattgatttcttac |
470 |
Q |
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| T |
1485 |
acgccactgacgaagcaacaataattgaaggagttgatttcttac |
1441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0955; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 1795 - 1721
Alignment:
| Q |
141 |
caatataggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaggggttgt |
215 |
Q |
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| T |
1795 |
caatagaggcatggaggattgttgagcccaaagtggagtcagttgacttgattgtggtaaagcatcaagggttgt |
1721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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