View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0948_low_13 (Length: 468)
Name: NF0948_low_13
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_13 |
 | |
|
| [»] scaffold0400 (1 HSPs) |
| | |
|
| [»] scaffold0365 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 86 - 347
Target Start/End: Original strand, 9334321 - 9334585
Alignment:
| Q |
86 |
ctattttcaatatatcaaacatgagta---gtatactgagaattgaaacaaaatacaagtcttcttggaaatataacacttttgccagtttcaccgtcat |
182 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9334321 |
ctattttcaatatatcaaacatgagtagtagtatactgagaattgaaacaaaatacaagtcttcttggaaatataacaattttgccagtttcaccgtcat |
9334420 |
T |
|
| Q |
183 |
gctgtcaggatataataataagagattaaatttccatatcgccaagttttgtgcgtaaacccaatggtgtgtctcatatcatctttctttccctcgcccc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9334421 |
gctgtcaggatataataataagagattaaatttccatatcgccaagttttgtgcgtaaacccaatggtgtgtctcatatcatctttctttccctcgcccc |
9334520 |
T |
|
| Q |
283 |
tgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaatcttaataaatcata |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9334521 |
tgtataaagtgacaaaagtttctgttaagaactaaatgagaatatccaaatcttaataaatcata |
9334585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 9329118 - 9329174
Alignment:
| Q |
277 |
cgcccctgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaat |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329118 |
cgcccctgtataaagtggcaaaagtttctgttaagaactaaatgagaagatccaaat |
9329174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 9328989 - 9329068
Alignment:
| Q |
97 |
atatcaaacatgagtagtatactgagaattgaaacaaaat-acaagtcttcttggaaatataacacttttgccagtttcacc |
177 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||| |||| |||||||||| ||||||| |
|
|
| T |
9328989 |
atatcaaacatgagtagtat--tcagaattgaaacaaaataacaagtcttgttggaaaaataaaacttttgccaatttcacc |
9329068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 9580306 - 9580227
Alignment:
| Q |
242 |
cccaatggtgtgtctcatatcatctttctttccctcgcccctgtataaagtgacaaaagtttctgttaagaactaaatga |
321 |
Q |
| |
|
||||||| |||||||| || ||||||||| | |||| |||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
9580306 |
cccaatgtcgtgtctcacgtcctctttcttttcgtcgctcctgtataaagtgacaaaagtttctgttaaaaactatatga |
9580227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 9334584 - 9334620
Alignment:
| Q |
389 |
tatatatctaatagtgagaattacataccaagtaata |
425 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9334584 |
tatatatctaatagtgagaattacacaccaagtaata |
9334620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 391
Target Start/End: Complemental strand, 451398 - 451271
Alignment:
| Q |
264 |
tctttctttccctcgcccctgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttata |
363 |
Q |
| |
|
|||||||||| || | ||| ||||||| ||||||| || ||| | ||||||||||||||||| |||||| |||||||| || || ||||||||||| |
|
|
| T |
451398 |
tctttctttctctaggtcctatataaagagacaaaaaattgtgtcaggaactaaatgagaagattcaaatcctaataaataatgtcatggaaaatttata |
451299 |
T |
|
| Q |
364 |
aaagtaaaatgataaattcattttctat |
391 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |
|
|
| T |
451298 |
aaagtaaattgataaattgattttctat |
451271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 3680104 - 3680059
Alignment:
| Q |
301 |
tttctgttaagaactaaatgagaagatccaaatcttaataaatcat |
346 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3680104 |
tttctgttaggaactaaatgagaagatccaaatcttagtaaatcat |
3680059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 15383 - 15458
Alignment:
| Q |
301 |
tttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttataaaagtaaaatgat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||| |||| |
|
|
| T |
15383 |
tttctgttaagaactaaatgagaagatccaaatcctaataaataattttatgtaaaatttataaaagtaaattgat |
15458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 16026 - 16101
Alignment:
| Q |
301 |
tttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttataaaagtaaaatgat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||| |||| |
|
|
| T |
16026 |
tttctgttaagaactaaatgagaagatccaaatcctaataaataattttatgtaaaatttataaaagtaaattgat |
16101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 14494059 - 14493984
Alignment:
| Q |
301 |
tttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagagaaaatttataaaagtaaaatgat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||| |||| |
|
|
| T |
14494059 |
tttctgttaagaactaaatgagaagatccaaatcctaataaataattttatgtaaaatttataaaagtaaattgat |
14493984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 387
Target Start/End: Original strand, 4432648 - 4432755
Alignment:
| Q |
280 |
ccctgtataaagtgacaaaagtttctgttaagaactaaatgagaagatccaaatcttaataaatcataacagag-aaaatttataaaagtaaaatgataa |
378 |
Q |
| |
|
||||||| ||||| ||||| || ||||| |||||||||||||||||||||||| |||||||| ||| | ||| ||||||||||| ||||| |||||| |
|
|
| T |
4432648 |
ccctgtaaaaagtaacaaagcattttgttaggaactaaatgagaagatccaaatcctaataaataatatc-gagcaaaatttataaccgtaaattgataa |
4432746 |
T |
|
| Q |
379 |
attcatttt |
387 |
Q |
| |
|
||| ||||| |
|
|
| T |
4432747 |
attgatttt |
4432755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University