View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_low_19 (Length: 402)
Name: NF0948_low_19
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 29 - 390
Target Start/End: Complemental strand, 3182148 - 3181790
Alignment:
| Q |
29 |
aataatgaccctcaaattaatattttgcaattatacccttttgaacaaattaattgaatatgatgtatatttgaaatttcagatattggactgaaaaggg |
128 |
Q |
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| T |
3182148 |
aataatgaccctcaaattaatattttgcaattatacccttttgaacaaattaattgaatatgatgtataattgaaatttcagatattggactgaaaaggg |
3182049 |
T |
|
| Q |
129 |
catttgttgggcaagaaattcaaatgttcaagatattgacgacacagcaatggctttcaggttactaagattgcatggctaccaagtttcagctggtgag |
228 |
Q |
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| T |
3182048 |
catttgttgggcaagaaattcaaatgttcaagatattgacgacacagcaatggctttcaggttactaagattgcatggctaccaagtttcagctggtgag |
3181949 |
T |
|
| Q |
229 |
tatttactaggttgagcacataatctaatatacttttgacccaaatttcgcaactttgtcgtttttgtcaagtagtatagtggcaagtggagaatttagg |
328 |
Q |
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| T |
3181948 |
tatttcctaagttgagcacataatataatatacttttgacccaaatttcgcaactgtgtcgtttttgtcaagtagtatagtggcaagtggagaatttagg |
3181849 |
T |
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| Q |
329 |
gttcaaactctgacctttacatactaatatttagggttgctaatgaattttgatttgatatt |
390 |
Q |
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| T |
3181848 |
gttcaaact---acctttacatactaatatttagggttgctaatgaattttgatttgatatt |
3181790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 3229450 - 3229581
Alignment:
| Q |
102 |
aaatttcagatattggactgaaaagggcatttgttgggcaagaaattcaaatgttcaagatattgacgacacagcaatggctttcaggttactaagattg |
201 |
Q |
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| T |
3229450 |
aaatttcagatattggactgaaaagggcatcttttccggaagaaattcaaatgttcaagatattgatgacacatcaatggctttcagattactaagatta |
3229549 |
T |
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| Q |
202 |
catggctaccaagtttcagctggtgagtattt |
233 |
Q |
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| T |
3229550 |
catggccaccatgtctcagccagtgagtattt |
3229581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 225
Target Start/End: Original strand, 37958957 - 37959073
Alignment:
| Q |
109 |
agatattggactgaaaagggcatttgttgggcaagaaattcaaatgttcaagatattgacgacacagcaatggctttcaggttactaagattgcatggct |
208 |
Q |
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|||||||||||| | || || ||||| ||||| ||||||||| | ||||||||||| |||||||||||||||| || || | ||||| ||||||||| |
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| T |
37958957 |
agatattggactaagaaaggtatttgctgggcgagaaattcagaggttcaagatatagacgacacagcaatgggatttagaatcctaaggttgcatggcc |
37959056 |
T |
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| Q |
209 |
accaagtttcagctggt |
225 |
Q |
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| T |
37959057 |
accaagtttcacctggt |
37959073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 12635758 - 12635648
Alignment:
| Q |
109 |
agatattggactgaaaagggcatttgttgggcaagaaattcaaatgttcaagatattgacgacacagcaatggctttcaggttactaagattgcatggct |
208 |
Q |
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|||||||||| ||| || || ||||| ||||||||||||||| | ||||||||||| || |||| | |||||| || || | || || ||||||||| |
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| T |
12635758 |
agatattggattgagaaaggtatttgctgggcaagaaattcataggttcaagatatagatgacataacaatgggatttagactgcttaggttgcatggcc |
12635659 |
T |
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| Q |
209 |
accaagtttca |
219 |
Q |
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||||||||||| |
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| T |
12635658 |
accaagtttca |
12635648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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