View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_low_22 (Length: 364)
Name: NF0948_low_22
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 356
Target Start/End: Complemental strand, 50808569 - 50808240
Alignment:
| Q |
29 |
agaggtagttctaaatata--gaggagcggctttttctcagctttggagacttgggtttgttgtaagtttttgtaccaggttgagtgacacagtctagag |
126 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50808569 |
agaggtagttctaaatatatagaggagcggctttttctcagctttggagacttgggtttgttgcaagtttttgtaccaggttgagtgacacagtctagag |
50808470 |
T |
|
| Q |
127 |
tgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttaatttccaaggatctaaccctgaacttca |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50808469 |
tgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttagtttccaaggatctaaccctgaacttca |
50808370 |
T |
|
| Q |
227 |
tacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgt |
326 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808369 |
tacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgt |
50808270 |
T |
|
| Q |
327 |
gctttgttacattgtttgttagcctttgct |
356 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
50808269 |
gctttgttacattgtttgttagcctttgct |
50808240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 29 - 356
Target Start/End: Original strand, 50867294 - 50867623
Alignment:
| Q |
29 |
agaggtagttctaaatat--agaggagcggctttttctcagctttggagacttgggtttgttgtaagtttttgtaccaggttgagtgacacagtctagag |
126 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50867294 |
agaggtagttctaaatatatagaggagcggctttttctcagctttggagacttgggtttgttgcaagtttttgtaccaggttgagtgacacagtctagag |
50867393 |
T |
|
| Q |
127 |
tgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttaatttccaaggatctaaccctgaacttca |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50867394 |
tgagataggcaaagcatatgaaaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttagtttccaaggatctaaccctgaacttca |
50867493 |
T |
|
| Q |
227 |
tacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgt |
326 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867494 |
tacttagaactccatcgatggatatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgt |
50867593 |
T |
|
| Q |
327 |
gctttgttacattgtttgttagcctttgct |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
50867594 |
gctttgttacattgtttgttagcctttgct |
50867623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 48 - 356
Target Start/End: Original strand, 19054869 - 19055177
Alignment:
| Q |
48 |
gaggagcggctttttctcagctttggagacttgggtttgttgtaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatga |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19054869 |
gaggagcggctttttctcagctttggagacttgggtttgttgcaagtttctgtaccaggttgagtgacacagtctcaagtgagataggcaaagcatatga |
19054968 |
T |
|
| Q |
148 |
aaaaacaacgtgagtagttaactctttcttttgttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatgg |
247 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19054969 |
aaaaacaacgtgagtagttaagtctttctttttttggatagatatatgttagtttccaaggatcaaaccctgaacttcatacttagaactccatcgatgg |
19055068 |
T |
|
| Q |
248 |
atatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgtta |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19055069 |
atatcaaactttttgttcaattttgtagctttgttgccctgtttgaaattaaagtagaataatttgaaaaaaggtttgtgctttgttacattgtttgtta |
19055168 |
T |
|
| Q |
348 |
gcctttgct |
356 |
Q |
| |
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||||||||| |
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| T |
19055169 |
gcctttgct |
19055177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 31109966 - 31109838
Alignment:
| Q |
48 |
gaggagcggctttttctcagctttggagacttgggtttgttgtaagtttttgtaccaggttgagtgacacagtctagagtgagataggcaaagcatatga |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| |
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| T |
31109966 |
gaggagcggctttttctcagctttggagacttggatttgttgcaagtttctgtaccaagttgagtgacacagtctcaagtgagatcggcaaagcatatgg |
31109867 |
T |
|
| Q |
148 |
aaaaacaacgtgagtagttaactctttct |
176 |
Q |
| |
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|||||||||||||||||||||| |||||| |
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| T |
31109866 |
aaaaacaacgtgagtagttaaccctttct |
31109838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 31109800 - 31109735
Alignment:
| Q |
181 |
ttggatagatatatgttaatttccaaggatctaaccctgaacttcatacttagaactccatcgatg |
246 |
Q |
| |
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|||||||||||||||| | |||||||||||| ||||||||| ||| ||||||||||||| |||||| |
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| T |
31109800 |
ttggatagatatatgtcagtttccaaggatcaaaccctgaagttcctacttagaactccttcgatg |
31109735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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