View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_low_25 (Length: 334)
Name: NF0948_low_25
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 3959411 - 3959541
Alignment:
| Q |
78 |
aggactggagtgaggtgcagctcccttttgcagaatgaaacacaacaaagtttaactcagaggcatggtttataatactggttgtgtctttagttccctc |
177 |
Q |
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| T |
3959411 |
aggactggagtgaggtgcagctcccttttgctgaatgagacacaacaaagtttaactcagaggcatggtttataatactggttgtgtctttagttccctc |
3959510 |
T |
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| Q |
178 |
gttttctatgttcccattttgaggtaaactg |
208 |
Q |
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| T |
3959511 |
cttttctatgttcccattttgaggtaaactg |
3959541 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 3959779 - 3959843
Alignment:
| Q |
207 |
tggtacatatatatgccctttatcgttggtgaaacttatatagtaaatatatcccttcttttctg |
271 |
Q |
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| T |
3959779 |
tggtacatatatatgccctttatcgttggtgaaacttatatagtaaatatatcccttcttttctg |
3959843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 19167705 - 19167640
Alignment:
| Q |
144 |
ggtttataatactggttgtgtctttagttccctcgttttctatgttccc-attttgaggtaaactg |
208 |
Q |
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| T |
19167705 |
ggtttataatattggttgtgtctttagttccttccatttctttgttcccaattttgaagtaaactg |
19167640 |
T |
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