View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_low_3 (Length: 594)
Name: NF0948_low_3
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_3 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 6e-94; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 273 - 565
Target Start/End: Original strand, 38633357 - 38633649
Alignment:
| Q |
273 |
gatgaaactcgtatatttattttgttctggttttcaaattatttttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaa |
372 |
Q |
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| T |
38633357 |
gatgaaactcatatatttatattgttctggttttcaaattatttttgtgtagtctatgaattctgtgatgctacatagttgcaaaaatttggccgaggaa |
38633456 |
T |
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| Q |
373 |
aaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaaatcactagaagttctnnnnnnnncggtaatttaatagatttgnnnnn |
472 |
Q |
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| T |
38633457 |
aaaaatattctgagggatataaacattcaacagaaaggtgttgcttcattcaaatcgctaaaagttctgaaaaaaacggtaatttaatagattcgttttt |
38633556 |
T |
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| Q |
473 |
nnnnnctttctctcattatgaagattggagtttctgtgtttggtattacttatattgcttttgttggaatgttgaaaacttggaacagattag |
565 |
Q |
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| T |
38633557 |
tttttttttctttcattatgaagattggagtttctgtgtttggtattacttatattgcttttgttggaatgttgaaaacttggaacagattag |
38633649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 81 - 282
Target Start/End: Original strand, 38633134 - 38633335
Alignment:
| Q |
81 |
tagattatactatcttcaaaaggatcggagaaaccgcgtggcgagtaaagagaagatacttatggatttatatatggctcttgatgaattgaatttcatg |
180 |
Q |
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| T |
38633134 |
tagattacactatctacaaaaggaacggagaaaccgcgtggcgagtaaggagaagatacttagggatttatatatggctcttgatgagttgaatttcatg |
38633233 |
T |
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| Q |
181 |
aacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacaggtattttctatttaatagcatgttataatgatgaaac |
280 |
Q |
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| T |
38633234 |
aacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatatagctattttctatttaatagcatgttataacgatgaaac |
38633333 |
T |
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| Q |
281 |
tc |
282 |
Q |
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| T |
38633334 |
tc |
38633335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 144 - 430
Target Start/End: Original strand, 38637182 - 38637461
Alignment:
| Q |
144 |
ggatttatatatggctcttgatgaattgaatttcatgaacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacag |
243 |
Q |
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| T |
38637182 |
ggatttgtatatgactcttgatcaattgaatttcataaacaaagtagcaaatggagaatggttcggggaaaagcttgataaaaatgtaagaaaaataaag |
38637281 |
T |
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| Q |
244 |
gtattttctatttaatagca-tgttataatgatgaaactcgtata-tttattttgttctggttttcaaattatttttgtgcagtctatgaattctttgat |
341 |
Q |
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| T |
38637282 |
-------ctatttaatagaatttttaatatgatgaaattaatatattttgtgttgttttgattttgaaatcgtctatgt--agtctttgaattattttaa |
38637372 |
T |
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| Q |
342 |
gctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaaatcac |
430 |
Q |
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| T |
38637373 |
gctacataggagcaaaagtttggccgaagagaaacaaattctgagggatataaagattctgcagaaagatgttgcttcattcaaatcac |
38637461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 316 - 410
Target Start/End: Original strand, 38690013 - 38690107
Alignment:
| Q |
316 |
tttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaaga |
410 |
Q |
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| T |
38690013 |
tttgtgtagtctttgagttatttgaagctacatggaagcaaaagtttggctgaggagaaacaaattctgagggatataaaaattcaacagaaaga |
38690107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 38690119 - 38690152
Alignment:
| Q |
404 |
agaaagatgttgcttcgttcaaatcactagaagt |
437 |
Q |
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| T |
38690119 |
agaaagatgttgcttcattcaaatcactagaagt |
38690152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 12384 - 12449
Alignment:
| Q |
360 |
tttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaa |
425 |
Q |
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| T |
12384 |
tttgggtgaagaaaaacaaattctgagagatataaagattcaacagaaagatgttgcttcattcaa |
12449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 12138 - 12206
Alignment:
| Q |
106 |
cggagaaaccgcgtggcgagtaaagagaagatacttatggatttatatatggctcttgatgaattgaat |
174 |
Q |
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| T |
12138 |
cggagaaacagtgtggcgattaaagggaaaatactaagggattttaatatggctcttgatgaattgaat |
12206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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