View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0948_low_42 (Length: 210)

Name: NF0948_low_42
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0948_low_42
NF0948_low_42
[»] chr4 (1 HSPs)
chr4 (1-136)||(35284544-35284679)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 35284679 - 35284544
Alignment:
1 atctgttaaaaggtagttaggaagttggttacttatttgcaaagttcacagttccagcttagttcactcactcactgtcatttgctttcttctaattgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
35284679 atctgttaaaaggtagttaggaagttggttacttatttgcaaagttcacagttccagcttagtttactcactcactgtcatttgctttcttctaattgaa 35284580  T
101 tattaatctcttagttgcaagaacttctctcaacct 136  Q
    ||||||||||||||||||||||||||||||||||||    
35284579 tattaatctcttagttgcaagaacttctctcaacct 35284544  T

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