View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0948_low_43 (Length: 208)
Name: NF0948_low_43
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 9797987 - 9798152
Alignment:
| Q |
14 |
gagatgaaccaatatggtcacttgcaccagaatccacaatccatgatccaatatttgagtgattcaaggaataagagaactttgttatacctgatgtaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9797987 |
gagatgaaccaatatggtcacttgcaccagaatccacaatccatgatccaatatttgagtgattcaaggaataagagaactttgttatacctgatgtaac |
9798086 |
T |
|
| Q |
114 |
atgtgaaactagattaaccttgctagaagatgctgattgattagctgcagatcatgaacactgaag |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9798087 |
atgtgaaactagattaaccttgctagaagatgctgattgattagctgcagatcatgaacactgaag |
9798152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University