View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0948_low_50 (Length: 202)

Name: NF0948_low_50
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0948_low_50
NF0948_low_50
[»] chr1 (1 HSPs)
chr1 (21-186)||(9797987-9798152)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 9798152 - 9797987
Alignment:
Q  21 cttcagtgttcatgatctgcagctaatcaatcagcatcttctagcaaggttaatctagtttcacatgttacatcaggtataacaaagttctcttattcct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798152 cttcagtgttcatgatctgcagctaatcaatcagcatcttctagcaaggttaatctagtttcacatgttacatcaggtataacaaagttctcttattcct 9798053  T
Q  121 tgaatcactcaaatattggatcatggattgtggattctggtgcaagtgaccatattggttcatctc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798052 tgaatcactcaaatattggatcatggattgtggattctggtgcaagtgaccatattggttcatctc 9797987  T

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