View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0948_low_8 (Length: 522)
Name: NF0948_low_8
Description: NF0948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0948_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 93 - 517
Target Start/End: Original strand, 16405002 - 16405427
Alignment:
| Q |
93 |
gtgaatacatataaaatcttaacatttttacttcatcttgtttacaattctcccacttttctctcattttcctttcattttcacattcttttaagtctta |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16405002 |
gtgaatacatataaaatcttaacatttttacttcatcttgtttgtaattctcccacttttctctcattttcttttcattttcacattcttttaagtctta |
16405101 |
T |
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| Q |
193 |
attacggtttgggtccatctttttgtcacccactaacaaaattggtcccccacccctcgtttttatatagctatgatttctcattcagatttt-ttaact |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16405102 |
attacggtttgggtccatctttttgtcacccactaacaaaattggtcccccacccctcgtttttatatagctatgatttctcattcagatttttttaact |
16405201 |
T |
|
| Q |
292 |
tgaaagtagtgatctatcaaatttaaattgaagtttttggttgtaattttatggttgttcgtcattctacattatcaaatcgtatgacacgtcatttaaa |
391 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16405202 |
tgaaagtagtgatctatcaaatataaattgaagtttttggttgtaattttatggttgttcgtcattctacattatcaaatcgtatgatacgtcatttaaa |
16405301 |
T |
|
| Q |
392 |
atatgttattatcattttcttttagttcaaaaatagtatgagaaaagaacaaaatcggataattttaaaatttaggaacctattcagagacgtcgatgac |
491 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16405302 |
atatgttattatcattttcttttaattcaaaaatagtatgagaaaagaacaaaatcggataattttaaaatttaggaacctattcggagacgtcgatgac |
16405401 |
T |
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| Q |
492 |
gacagcaacaattaagtattatctac |
517 |
Q |
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|||| |||||||||| |||||||||| |
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| T |
16405402 |
gacaacaacaattaaatattatctac |
16405427 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 38470228 - 38470289
Alignment:
| Q |
334 |
gtaattttatggttgttcgtcattctacattatcaaatcgtatgacacgtcatttaaaatat |
395 |
Q |
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| T |
38470228 |
gtaatttcatggttgttgttcattctacatcattaagttgtatgacacgtcatttaaaatat |
38470289 |
T |
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