View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0949_low_1 (Length: 776)

Name: NF0949_low_1
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0949_low_1
NF0949_low_1
[»] chr5 (2 HSPs)
chr5 (29-699)||(35350424-35351093)
chr5 (118-156)||(2932222-2932260)
[»] chr7 (2 HSPs)
chr7 (374-436)||(22159516-22159578)
chr7 (374-436)||(22218224-22218286)
[»] chr4 (1 HSPs)
chr4 (122-183)||(27670283-27670343)
[»] chr3 (1 HSPs)
chr3 (374-433)||(39022842-39022901)
[»] chr8 (1 HSPs)
chr8 (105-194)||(29136839-29136927)


Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 29 - 699
Target Start/End: Complemental strand, 35351093 - 35350424
Alignment:
Q  29 actttctatgtggttaacgtgattccaatatattgttaaagaatatacattgtttcaaaactcattaataacttcattaaccacaattgtcaagtgttta 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35351093 actttctatgtggttaacgtgattccaatatattgttaaagaatatacattgtttcgaaactcattaataacttcattaaccacaattgtcaagtgttta 35350994  T
Q  129 actacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgtggttaataaaaggattaactatgattttagtccctccaattatag 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35350993 actacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgtggttaataaaaggattaactatgattttagtccctccaattatag 35350894  T
Q  229 agnnnnnnnnnnnnnnnnnnnagtccctataactttttctgtttagattcacgcctgcaagttaaaaaattgttacttttagtccttgatggcatgcata 328  Q
    ||                   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||    
T  35350893 agttttttggttttactttttagtccatataactttttctgtttagattcacgcctgcaagttaaaaaattgttacttttagtccttgacagcatacata 35350794  T
Q  329 gctcaataaaatcatgccacattgcccaatatgttgatgtcagggaagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgaga 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35350793 gctcaataaaatcatgccacattgcccaatatgttgatgtcagggaagcaacaatctctgaatttgcagtgactgaacccaaacaaaaaacttatcgaga 35350694  T
Q  429 ctaaaaccnnnnnnntgttataattacaagaactaaattcatatttaagccttaacaaaattacattgatgaagttctgtaatacaactcagttggtagc 528  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35350693 ctaaaaccaaaaaaatgttataattacaagaactaaattcatatttaagccttaacaaaattacattgatgatgttctgtaatacaactcagttggtagc 35350594  T
Q  529 tgcaagtatgttgatacgcaggggcaagggtttgaaa-ccagattatccatttttccacacttaaatgtgtgagtctcatcaccaggctaatttgtctgt 627  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| |    
T  35350593 tgcaagtacgttgatacgcaggggcaagggtttgaaacccagattatccatttttgcacacttaaa--tgtgagtctcatcaccaggctaatttgtctat 35350496  T
Q  628 gtgtgnnnnnnnncgtgattgtgttaatcacttaaataacacaacttaatccaattagtcttgtaatctctg 699  Q
    ||||         | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35350495 gtgtattttttttcatgattgtgttaatcacttaaataacacaacttaatccaagtagtcttgtaatctctg 35350424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 2932260 - 2932222
Alignment:
Q  118 tcaagtgtttaactacatgtagatttgaacacctgaaaa 156  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  2932260 tcaagtgttcaaatacatgtagatttgaacacctgaaaa 2932222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 22159516 - 22159578
Alignment:
Q  374 aagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaaacc 436  Q
    |||||||||||| ||||||||||| ||||||| ||||||||| ||||||  | ||||||||||    
T  22159516 aagcaacaatttttgaatttgcagggactgaaaccaaacaaataacttagagggactaaaacc 22159578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 22218224 - 22218286
Alignment:
Q  374 aagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaaacc 436  Q
    |||||||||||| ||||||||||| ||||||| ||||||||| ||||||  | ||||||||||    
T  22218224 aagcaacaatttttgaatttgcagggactgaaaccaaacaaataacttagagggactaaaacc 22218286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 27670343 - 27670283
Alignment:
Q  122 gtgtttaactacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgt 183  Q
    ||||| |||||||||||||||||||||| ||||||||| | ||| ||||| |||||||||||    
T  27670343 gtgttcaactacatgtagatttgaacacatgaaaattt-tagttaatcgcgtccaaatttgt 27670283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 433
Target Start/End: Original strand, 39022842 - 39022901
Alignment:
Q  374 aagcaacaatttctgaatttgcagtgactgaacccaaacaaaaaacttatcgagactaaa 433  Q
    ||||||||||||| |||||||||| ||||||| | || |||||||||||| | |||||||    
T  39022842 aagcaacaatttccgaatttgcagggactgaatctaagcaaaaaacttatagggactaaa 39022901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 29136927 - 29136839
Alignment:
Q  105 ttaaccacaattgtcaagtgtttaactacatgtagatttgaacacctgaaaatttgtggttgatcgcctccaaatttgtggttaataaaa 194  Q
    ||||||| |||| |||  |||| ||||||||||||||||||||||||  ||| |||||||| ||| | |  |||||||||||||| ||||    
T  29136927 ttaaccataattttcagatgttcaactacatgtagatttgaacaccttcaaa-ttgtggttaatcacatataaatttgtggttaaaaaaa 29136839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University