View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0949_low_11 (Length: 365)

Name: NF0949_low_11
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0949_low_11
NF0949_low_11
[»] chr4 (7 HSPs)
chr4 (13-353)||(55908242-55908582)
chr4 (52-257)||(547197-547402)
chr4 (181-258)||(1600814-1600891)
chr4 (210-307)||(12118870-12118967)
chr4 (138-331)||(3438186-3438381)
chr4 (210-307)||(1527763-1527860)
chr4 (216-257)||(53761398-53761439)
[»] chr2 (2 HSPs)
chr2 (13-353)||(1037178-1037518)
chr2 (41-116)||(32785526-32785601)
[»] scaffold0262 (1 HSPs)
scaffold0262 (127-312)||(276-461)
[»] scaffold0295 (1 HSPs)
scaffold0295 (13-134)||(354-475)
[»] chr1 (6 HSPs)
chr1 (138-311)||(19468064-19468237)
chr1 (131-278)||(29658545-29658692)
chr1 (131-278)||(29691060-29691207)
chr1 (131-278)||(29718572-29718719)
chr1 (138-280)||(33160874-33161016)
chr1 (217-258)||(52093223-52093264)
[»] chr6 (9 HSPs)
chr6 (131-260)||(7993792-7993921)
chr6 (132-254)||(6596562-6596684)
chr6 (216-259)||(8913680-8913723)
chr6 (216-255)||(6432596-6432635)
chr6 (216-345)||(6594125-6594257)
chr6 (297-337)||(6436757-6436798)
chr6 (210-254)||(6602821-6602865)
chr6 (132-260)||(7131978-7132106)
chr6 (297-345)||(6403407-6403458)
[»] chr7 (2 HSPs)
chr7 (138-280)||(10169726-10169868)
chr7 (138-280)||(10177251-10177393)
[»] chr8 (3 HSPs)
chr8 (41-260)||(17627666-17627885)
chr8 (52-127)||(17636137-17636212)
chr8 (237-317)||(5767214-5767294)
[»] chr5 (3 HSPs)
chr5 (145-276)||(38267147-38267278)
chr5 (220-276)||(37938351-37938407)
chr5 (81-164)||(32267785-32267868)
[»] chr3 (2 HSPs)
chr3 (215-257)||(51764059-51764101)
chr3 (220-248)||(33396948-33396976)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 55908582 - 55908242
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55908582 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaaaaattagaattatcta 55908483  T
Q  113 cactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctaca 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55908482 cactcttttcccccaaacttgtgtgttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctaca 55908383  T
Q  213 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908382 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgt 55908283  T
Q  313 atacgacacttggataacaaagagtatattccaacgtaatt 353  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  55908282 atacgacacttggataacaaagagtatattccaacataatt 55908242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 257
Target Start/End: Original strand, 547197 - 547402
Alignment:
Q  52 aaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttccattttgacgt 151  Q
    |||||||| ||||| |||||| || ||| |||| ||||| |  ||||||||||||| ||||||||||    ||| |   ||||| ||||||||||||  |    
T  547197 aaatggagagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacactctccatcccaatttttgtgagttccattttgatct 547296  T
Q  152 caataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaa 251  Q
    || ||||||||| |||||| |||||||| ||||||| |||  | | ||||||    | ||| | ||||||||||||| || |||||||||||||||||||    
T  547297 cactaagtgaagcacaattactaacgagtgcaaacaaggctaaatttgtgagttgcccacactgactaaggtttataaactccaaatcaccaagaaacaa 547396  T
Q  252 agacaa 257  Q
    ||||||    
T  547397 agacaa 547402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 258
Target Start/End: Original strand, 1600814 - 1600891
Alignment:
Q  181 gcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 258  Q
    ||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  1600814 gcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 1600891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 12118967 - 12118870
Alignment:
Q  210 acattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaat 307  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||||||   |||||    ||||||||||||| | |||||||||||||||||||    
T  12118967 acatttactaatgtttatagacaacaaatcaccaagaaacaaagacaactcaatgacattccaatcattcataaacttagcattttgaagatccaaat 12118870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 331
Target Start/End: Complemental strand, 3438381 - 3438186
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    ||||||||| |  ||| |||||||||||||||| |||| ||| | ||| | |||  | | |||||||||   ||| ||||||||||||||||||||||||    
T  3438381 ttccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaa 3438282  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatac---gacacttggataaca 331  Q
    |||||| ||||||  |||||||   | |||| | ||||||| | ||| ||    |||||||||||||||||||||||||   |||||||||||||||    
T  3438281 tcaccatgaaacatggacaacttgacaacatggcgatcatttagaaa-gtaagtttttgaagatccaaatgttgtatacattgacacttggataaca 3438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 1527860 - 1527763
Alignment:
Q  210 acattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaat 307  Q
    ||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||   |||||    ||||||||||||| ||| |||||||||||||||||    
T  1527860 acatttactaatgtttatagacaacaaatcactaagaaacgaagacaactcaatgacatgcaaatcattcataaacttggaattttgaagatccaaat 1527763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 53761439 - 53761398
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaaacaaagacaa 257  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  53761439 actaaggtttatggacaccaaatcaccaagaagcaaagacaa 53761398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 1037518 - 1037178
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037518 aatatgatgttttcatttagtaactgaaaattgcaagttaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 1037419  T
Q  113 cactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctaca 212  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1037418 cactcttttcccccaaacttgtgtgttccattttgacctcaataagtgaaggacaattcctaacgagtgcaaacatggccgagtctgtgagcatgctaca 1037319  T
Q  213 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037318 ttcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgt 1037219  T
Q  313 atacgacacttggataacaaagagtatattccaacgtaatt 353  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  1037218 atacgacacttggataacaaagagtatattccaacataatt 1037178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 32785601 - 32785526
Alignment:
Q  41 aattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacact 116  Q
    |||||| ||| ||||||||  ||||||||||| || ||| |||| |||||||| ||||||||||||| | ||||||    
T  32785601 aattgcgagccaaatggagaaactttaattgagggattacaacaaaatccatcaaagaattagaattttgtacact 32785526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 127 - 312
Target Start/End: Original strand, 276 - 461
Alignment:
Q  127 aaacttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggttta 226  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  276 aaacttgtgtgttccattttgatctcaataagtgaaggataattcctaacgagtgcaaacatggttgagtatgtgagcatgctacattcactaagattta 375  T
Q  227 tagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgt 312  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  376 tagacaccaaatcgccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgttgt 461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 475 - 354
Alignment:
Q  13 aatatgatgttttcatttagtaactgaaaattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatcta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  475 aatatgatgttttcatttagtaactgaaaattgcaagctaaatgaagtgactttaattgatggtttaaaacacaatccattgaagaattagaattatcta 376  T
Q  113 cactcttttcccccaaacttgt 134  Q
    | | |||| |||||||||||||    
T  375 cgcactttccccccaaacttgt 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 311
Target Start/End: Complemental strand, 19468237 - 19468064
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| | ||||| ||  || | ||||||     ||||||||||||||||||||||||| |||    
T  19468237 ttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgaggtccatacattcactaaggtttatagacactaaa 19468138  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttg 311  Q
    ||||||||||||||||||||||   | |||| ||||||||||| ||||   |||  ||||||||||||||||||    
T  19468137 tcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttg 19468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 29658692 - 29658545
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29658692 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29658593  T
Q  231 caccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcatt 278  Q
    |||||||| | ||||||||||||| ||||| || ||||  ||||||||    
T  29658592 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcatt 29658545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 29691207 - 29691060
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29691207 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29691108  T
Q  231 caccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcatt 278  Q
    |||||||| | ||||||||||||| ||||| || ||||  ||||||||    
T  29691107 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcatt 29691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 29718719 - 29718572
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    |||||| ||||||||||| |||| ||||||||||||||||  ||||||| | |||||  || || ||||| ||| | | |||| || |||||||||||||    
T  29718719 ttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgtcagcttccaacatccagtaaggtttataga 29718620  T
Q  231 caccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcatt 278  Q
    |||||||| | ||||||||||||| ||||| || ||||  ||||||||    
T  29718619 caccaaatgagcaagaaacaaagagaactcggcaacatgttgatcatt 29718572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 33160874 - 33161016
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    ||||||||||| |||| ||||||||||||| ||  |||| || | |||||  || || ||||||||| | | |||| || ||||||||||||||||||||    
T  33160874 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaa 33160973  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattca 280  Q
     || ||||||||||||| ||||| || ||||  ||||||||||    
T  33160974 gcagcaagaaacaaagagaactcggcaacatgttgatcattca 33161016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 52093223 - 52093264
Alignment:
Q  217 ctaaggtttatagacaccaaatcaccaagaaacaaagacaac 258  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  52093223 ctaaggtttatagacaccaaattaccaagaaccaaagacaac 52093264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 7993921 - 7993792
Alignment:
Q  131 ttgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttataga 230  Q
    ||||| ||||||||||||  |||  |||||| ||||| || |||||||| | ||||| ||| || ||||||||||| | |||||||||||||||||||||    
T  7993921 ttgtgcgttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttataga 7993822  T
Q  231 caccaaatcaccaagaaacaaagacaactc 260  Q
    |||||||||||||||||  || ||||||||    
T  7993821 caccaaatcaccaagaagtaatgacaactc 7993792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 6596684 - 6596562
Alignment:
Q  132 tgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagac 231  Q
    ||||| || ||||||||  ||| |||| ||||||||||| || ||||||| ||||| ||| || ||||||||| |   ||| | | |||||||||||||     
T  6596684 tgtgttttgcattttgatctcactaagcgaaggacaatttcttacgagggaaaacacggctgattctgtgagccttgaacaatgattaaggtttatagaa 6596585  T
Q  232 accaaatcaccaagaaacaaaga 254  Q
    |||||||||||||||||||||||    
T  6596584 accaaatcaccaagaaacaaaga 6596562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 8913723 - 8913680
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaaacaaagacaact 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaact 8913680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 6432596 - 6432635
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaaacaaagac 255  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6432596 actaaggtttatagacaccaaatcagcaagaaacaaagac 6432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 345
Target Start/End: Complemental strand, 6594257 - 6594125
Alignment:
Q  216 actaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtata 315  Q
    ||||||||| || |||  |||| || ||||||||||||||||||| || ||||  |||||||||| |||    || |  | ||||| |||||||||||||    
T  6594257 actaaggttaatggacttcaaaccagcaagaaacaaagacaactcggcaacatgttgatcattcagaaaacgagcgtacttaagattcaaatgttgtata 6594158  T
Q  316 c---gacacttggataacaaagagtatattcca 345  Q
    |   |||||||||||||||||||||| ||||||    
T  6594157 catcgacacttggataacaaagagtacattcca 6594125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 6436757 - 6436798
Alignment:
Q  297 aagatccaaatgttgtatac-gacacttggataacaaagagt 337  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  6436757 aagatccaaatgttgtatactgacacttggataacaaagagt 6436798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 6602865 - 6602821
Alignment:
Q  210 acattcactaaggtttatagacaccaaatcaccaagaaacaaaga 254  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||    
T  6602865 acattcactaaggtttatagacaccaaattagtaagaaacaaaga 6602821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 7131978 - 7132106
Alignment:
Q  132 tgtgtgttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagac 231  Q
    ||||| |||||||||||  ||| |||||||||| || || |||||||| | | ||| |||  | ||||||||||| | ||| |||| |||||||| ||||    
T  7131978 tgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagcatccaacagtcacgaaggtttacagac 7132077  T
Q  232 accaaatcaccaagaaacaaagacaactc 260  Q
    |  || |||| ||||||| ||||||||||    
T  7132078 agtaagtcacgaagaaaccaagacaactc 7132106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 6403407 - 6403458
Alignment:
Q  297 aagatccaaatgttgtatacg---acacttggataacaaagagtatattcca 345  Q
    ||||||||||||||||||||    |||||||||||||| |||||||||||||    
T  6403407 aagatccaaatgttgtatacatctacacttggataacagagagtatattcca 6403458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 10169868 - 10169726
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||  || | ||||| |     ||||| ||||||||||| |||||| |||    
T  10169868 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaa 10169769  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattca 280  Q
    ||||||| ||||||||| |||||  | |||| |||||||||||    
T  10169768 tcaccaataaacaaagaaaactcatcaacatagtgatcattca 10169726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 10177393 - 10177251
Alignment:
Q  138 ttccattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaa 237  Q
    |||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||  || | ||||| |     ||||| ||||||||||| |||||| |||    
T  10177393 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaaggatgaatatgtgatctccaaacattgactaaggtttacagacactaaa 10177294  T
Q  238 tcaccaagaaacaaagacaactctgcgacatcgtgatcattca 280  Q
    ||||||| ||||||||| |||||  | |||| |||||||||||    
T  10177293 tcaccaataaacaaagaaaactcatcaacatagtgatcattca 10177251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 17627885 - 17627666
Alignment:
Q  41 aattgcaagctaaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttc 140  Q
    ||||| |||| |||| ||| || ||||||||| || ||| |||  |||||| | ||||||||||||| | || ||||| |||||| | |  ||||  |||    
T  17627885 aattgaaagccaaatagagagattttaattgagggcttacaacgaaatccaccaaagaattagaattctttagactctcttccccaatagatgtgcattc 17627786  T
Q  141 cattttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatca 240  Q
    |||||| |  ||| ||||||||||||| || |||||||| | ||||| ||| || ||   |||||| | ||| | ||||||||||| ||||||||||| |    
T  17627785 catttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaatta 17627686  T
Q  241 ccaagaaacaaagacaactc 260  Q
    ||||||||  ||||||||||    
T  17627685 ccaagaaatgaagacaactc 17627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 17636212 - 17636137
Alignment:
Q  52 aaatggagtgactttaattgatggtttaaaacacaatccatcgaagaattagaattatctacactcttttccccca 127  Q
    |||||||| ||||| |||||| |||||| |||| ||| |||||||||||||||||| |||||| | ||||||||||    
T  17636212 aaatggagagacttaaattgagggtttacaacaaaattcatcgaagaattagaattctctacattattttccccca 17636137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 5767294 - 5767214
Alignment:
Q  237 atcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgttgtatacg 317  Q
    |||||||||||||||||||||||| || |||   |||||||||| |||    | || |||||||||||||||||| |||||    
T  5767294 atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagtatattgaagatccaaatgttggatacg 5767214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 38267278 - 38267147
Alignment:
Q  145 ttgacgtcaataagtgaaggacaattcctaacgagggcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaa 244  Q
    ||||| ||| ||||||||||||| ||||||||||| ||||| |  || || | || |||  |  |||| | |||||||||||||||||||| || |  ||    
T  38267278 ttgacctcactaagtgaaggacagttcctaacgagtgcaaaaaaagcagaatatgagaggttagtacaataactaaggtttatagacaccagatgaggaa 38267179  T
Q  245 gaaacaaagacaactctgcgacatcgtgatca 276  Q
    |||||||||||||||| || |||| |||||||    
T  38267178 gaaacaaagacaactcggcaacatggtgatca 38267147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 37938351 - 37938407
Alignment:
Q  220 aggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatca 276  Q
    |||||||| ||||| ||||||  |||||||||||||||||| ||||||| |||||||    
T  37938351 aggtttattgacactaaatcaggaagaaacaaagacaactcagcgacatggtgatca 37938407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 32267785 - 32267868
Alignment:
Q  81 aacacaatccatcgaagaattagaattatctacactcttttcccccaaacttgtgtgttccattttgacgtcaataagtgaagg 164  Q
    |||| |||||||| |||| |||||| | |||| |||||||| ||| | || |||||||||||||||||  ||| ||||||||||    
T  32267785 aacaaaatccatcaaagatttagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagg 32267868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 51764101 - 51764059
Alignment:
Q  215 cactaaggtttatagacaccaaatcaccaagaaacaaagacaa 257  Q
    ||||||||||||| |||||||||| || |||||||||||||||    
T  51764101 cactaaggtttatggacaccaaattactaagaaacaaagacaa 51764059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 33396948 - 33396976
Alignment:
Q  220 aggtttatagacaccaaatcaccaagaaa 248  Q
    |||||||||||||||||||||||||||||    
T  33396948 aggtttatagacaccaaatcaccaagaaa 33396976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University