View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0949_low_12 (Length: 348)
Name: NF0949_low_12
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0949_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 8630485 - 8630753
Alignment:
| Q |
22 |
gggggaaatactcagctagatccatatgattttaagattatggtgcttaacgtaatatatctctca---tatgcaaatatgacaggtaaaatggcatggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8630485 |
gggggaaatactcagctagatccatatgattttaagattatggtgcttaacgtaatatatctctcagtatatgcaaatatgacaggtaaaatggcatggt |
8630584 |
T |
|
| Q |
119 |
aaatttcacataaaacctcgactaaattagaatccttatcatattagttggtatctcactatctcgccaacaatgctatataatttagttgtaatatgat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8630585 |
aaatttcacataaaacctcgactaaattagaatccttatcatattagttggtatctcactatctcgccaacaatgctatataatttagttgtaatatgat |
8630684 |
T |
|
| Q |
219 |
tgacaaacaaattaaattgacagattaatatattaaataagttcacattgttcaaaaagacatatgtgt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8630685 |
tgacaaacaaattaaattgacagattaatatattaaataagttcacattgttcaaaaagacatatgtgt |
8630753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 1326423 - 1326477
Alignment:
| Q |
284 |
gtgtgcatgcaaaccatggtctcttttatttcaaaactcttatttcatgcctatg |
338 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1326423 |
gtgtgcatgcaaaccatagtctcttttatttcaaaacccttatttcatgcctatg |
1326477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 12646273 - 12646311
Alignment:
| Q |
294 |
aaaccatggtctcttttatttcaaaactcttatttcatg |
332 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
12646273 |
aaaccatggtctcttttatttcaaaaccctcatttcatg |
12646311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University