View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0949_low_17 (Length: 310)

Name: NF0949_low_17
Description: NF0949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0949_low_17
NF0949_low_17
[»] chr1 (3 HSPs)
chr1 (100-230)||(26790813-26790943)
chr1 (167-221)||(26784554-26784608)
chr1 (172-221)||(26831263-26831312)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 26790813 - 26790943
Alignment:
Q  100 atatattaaaataaaaccaatgtaacatcatattttggtaacataacaacaagtaaagagtttagaaattggattaagaaaatggaacctgtaaattgga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26790813 atatattaaaataaaaccaatgtaacatcatattttggtaacataacaacaagtaaagagtttagaaattggattaagaaaatggaacctgtaaattgga 26790912  T
Q  200 gagatataggaatttccatcctatgatacta 230  Q
    |||||||||||||||||||||| ||| ||||    
T  26790913 gagatataggaatttccatcctttgagacta 26790943  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 26784554 - 26784608
Alignment:
Q  167 attggattaagaaaatggaacctgtaaattggagagatataggaatttccatcct 221  Q
    |||| |||||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  26784554 attgaattaagtaaatggaacctgtatattggagaggtataagaatttccatcct 26784608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 26831263 - 26831312
Alignment:
Q  172 attaagaaaatggaacctgtaaattggagagatataggaatttccatcct 221  Q
    ||||||||||| ||||||| |||| |||||| |||| |||||||||||||    
T  26831263 attaagaaaatcgaacctgcaaatcggagaggtataagaatttccatcct 26831312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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